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The map label for this gene is prfC

Identifier: 15926608

GI number: 15926608

Start: 994216

End: 995778

Strand: Direct

Name: prfC

Synonym: SA0877

Alternate gene names: 15926608

Gene position: 994216-995778 (Clockwise)

Preceding gene: 15926607

Following gene: 15926609

Centisome position: 35.32

GC content: 34.04

Gene sequence:

>1563_bases
ATGAACTTAAAGCAAGAAGTTGAGTCTAGAAAGACTTTTGCGATTATTTCACATCCCGATGCAGGGAAAACAACGTTAAC
TGAAAAACTATTGTACTTCAGTGGTGCTATTCGTGAAGCGGGTACAGTTAAAGGGAAGAAGACTGGTAAATTTGCGACAA
GTGACTGGATGAAAGTTGAACAAGAGCGTGGTATTTCTGTAACTAGTTCAGTAATGCAATTTGATTACGATGATTATAAA
ATCAATATCTTAGATACACCAGGACATGAAGACTTTTCAGAAGATACGTATAGAACATTAATGGCAGTTGACAGTGCTGT
CATGGTCATAGACTGTGCAAAAGGTATTGAACCACAAACATTGAAGTTATTTAAAGTTTGTAAAATGCGTGGTATTCCAA
TCTTTACATTCATTAATAAATTAGACCGAGTAGGTAAAGAACCATTTGAATTATTAGATGAAATCGAAGAGACATTAAAT
ATTGAAACATACCCTATGAATTGGCCAATTGGTATGGGACAAAGTTTCTTTGGCATCATTGATAGAAAGTCTAAAACAAT
TGAACCATTTAGAGATGAAGAAAATATATTACATTTGAATGATGATTTTGAGTTGGAAGAAGATCATGCAATTACAAATG
ATAGTGCTTTTGAACAAGCGATTGAAGAATTAATGTTGGTTGAAGAAGCGGGTGAAGCCTTTGATAATGACGCGCTGTTG
AGTGGAGACTTAACACCTGTATTTTTCGGTTCAGCTTTAGCTAACTTTGGTGTACAAAATTTCTTAAATGCATATGTTGA
TTTTGCGCCAATGCCAAATGCGAGACAAACAAAAGAAGACGTTGAAGTAAGCCCGTTTGATGATTCATTTTCAGGATTTA
TCTTTAAAATTCAAGCCAACATGGACCCTAAACACCGTGATAGAATTGCCTTTATGCGTGTCGTTAGTGGTGCATTTGAA
CGTGGTATGGATGTTACTTTGCAACGTACTAATAAAAAGCAAAAGATCACACGTTCAACGTCATTTATGGCAGACGATAA
AGAAACTGTGAATCATGCTGTAGCAGGCGATATCATTGGACTATATGATACTGGTAATTATCAAATTGGAGATACTTTAG
TTGGTGGAAAACAAACCTACAGTTTCCAAGATTTACCACAATTTACGCCAGAAATTTTTATGAAAGTTTCTGCTAAAAAC
GTCATGAAACAGAAGCATTTCCATAAAGGTATTGAACAATTAGTACAAGAAGGTGCGATTCAATACTATAAAACATTACA
CACAAACCAAATTATTTTAGGTGCTGTTGGTCAGTTACAATTTGAAGTTTTCGAACATAGAATGAAAAACGAATATAATG
TTGATGTTGTTATGGAGCCAGTAGGCCGTAAAATTGCACGTTGGATTGAAAATGAAGACCAAATTACAGATAAGATGAAC
ACATCAAGATCGATTTTAGTGAAAGATAGATATGACGATTTAGTATTCTTATTTGAAAATGAATTTGCAACAAGATGGTT
TGAAGAGAAATTCCTTGAAATTAAATTGTATAGTTTACTTTAA

Upstream 100 bases:

>100_bases
TACTCATGCAATTGTTTGTTTTTAAAGAAGAGGAAGAGGCAGAATCGATTGCATCACAACTAACAGATTGGATAGAAACA
TATAAAAAGGAGAAAGACTA

Downstream 100 bases:

>100_bases
CAGCTCAATTGTATAATCGAATTTGTTACATTAAAAATAATTGTTTCGTTGAAGAAAAATAAATTGTATATTTTAAAAGA
AAAAGGTATACTATGATGTA

Product: peptide chain release factor 3

Products: NA

Alternate protein names: RF-3

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MNLKQEVESRKTFAIISHPDAGKTTLTEKLLYFSGAIREAGTVKGKKTGKFATSDWMKVEQERGISVTSSVMQFDYDDYK
INILDTPGHEDFSEDTYRTLMAVDSAVMVIDCAKGIEPQTLKLFKVCKMRGIPIFTFINKLDRVGKEPFELLDEIEETLN
IETYPMNWPIGMGQSFFGIIDRKSKTIEPFRDEENILHLNDDFELEEDHAITNDSAFEQAIEELMLVEEAGEAFDNDALL
SGDLTPVFFGSALANFGVQNFLNAYVDFAPMPNARQTKEDVEVSPFDDSFSGFIFKIQANMDPKHRDRIAFMRVVSGAFE
RGMDVTLQRTNKKQKITRSTSFMADDKETVNHAVAGDIIGLYDTGNYQIGDTLVGGKQTYSFQDLPQFTPEIFMKVSAKN
VMKQKHFHKGIEQLVQEGAIQYYKTLHTNQIILGAVGQLQFEVFEHRMKNEYNVDVVMEPVGRKIARWIENEDQITDKMN
TSRSILVKDRYDDLVFLFENEFATRWFEEKFLEIKLYSLL

Sequences:

>Translated_520_residues
MNLKQEVESRKTFAIISHPDAGKTTLTEKLLYFSGAIREAGTVKGKKTGKFATSDWMKVEQERGISVTSSVMQFDYDDYK
INILDTPGHEDFSEDTYRTLMAVDSAVMVIDCAKGIEPQTLKLFKVCKMRGIPIFTFINKLDRVGKEPFELLDEIEETLN
IETYPMNWPIGMGQSFFGIIDRKSKTIEPFRDEENILHLNDDFELEEDHAITNDSAFEQAIEELMLVEEAGEAFDNDALL
SGDLTPVFFGSALANFGVQNFLNAYVDFAPMPNARQTKEDVEVSPFDDSFSGFIFKIQANMDPKHRDRIAFMRVVSGAFE
RGMDVTLQRTNKKQKITRSTSFMADDKETVNHAVAGDIIGLYDTGNYQIGDTLVGGKQTYSFQDLPQFTPEIFMKVSAKN
VMKQKHFHKGIEQLVQEGAIQYYKTLHTNQIILGAVGQLQFEVFEHRMKNEYNVDVVMEPVGRKIARWIENEDQITDKMN
TSRSILVKDRYDDLVFLFENEFATRWFEEKFLEIKLYSLL
>Mature_520_residues
MNLKQEVESRKTFAIISHPDAGKTTLTEKLLYFSGAIREAGTVKGKKTGKFATSDWMKVEQERGISVTSSVMQFDYDDYK
INILDTPGHEDFSEDTYRTLMAVDSAVMVIDCAKGIEPQTLKLFKVCKMRGIPIFTFINKLDRVGKEPFELLDEIEETLN
IETYPMNWPIGMGQSFFGIIDRKSKTIEPFRDEENILHLNDDFELEEDHAITNDSAFEQAIEELMLVEEAGEAFDNDALL
SGDLTPVFFGSALANFGVQNFLNAYVDFAPMPNARQTKEDVEVSPFDDSFSGFIFKIQANMDPKHRDRIAFMRVVSGAFE
RGMDVTLQRTNKKQKITRSTSFMADDKETVNHAVAGDIIGLYDTGNYQIGDTLVGGKQTYSFQDLPQFTPEIFMKVSAKN
VMKQKHFHKGIEQLVQEGAIQYYKTLHTNQIILGAVGQLQFEVFEHRMKNEYNVDVVMEPVGRKIARWIENEDQITDKMN
TSRSILVKDRYDDLVFLFENEFATRWFEEKFLEIKLYSLL

Specific function: Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-

COG id: COG4108

COG function: function code J; Peptide chain release factor RF-3

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding elongation factor family. PrfC subfamily

Homologues:

Organism=Homo sapiens, GI18390331, Length=492, Percent_Identity=30.8943089430894, Blast_Score=198, Evalue=1e-50,
Organism=Homo sapiens, GI19923640, Length=526, Percent_Identity=26.425855513308, Blast_Score=177, Evalue=3e-44,
Organism=Homo sapiens, GI25306283, Length=393, Percent_Identity=30.5343511450382, Blast_Score=164, Evalue=3e-40,
Organism=Homo sapiens, GI25306287, Length=497, Percent_Identity=25.5533199195171, Blast_Score=149, Evalue=9e-36,
Organism=Homo sapiens, GI157426893, Length=161, Percent_Identity=32.2981366459627, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI94966754, Length=174, Percent_Identity=29.3103448275862, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI4503483, Length=149, Percent_Identity=29.5302013422819, Blast_Score=77, Evalue=6e-14,
Organism=Homo sapiens, GI310132016, Length=123, Percent_Identity=31.7073170731707, Blast_Score=74, Evalue=5e-13,
Organism=Homo sapiens, GI310110807, Length=123, Percent_Identity=31.7073170731707, Blast_Score=74, Evalue=5e-13,
Organism=Homo sapiens, GI310123363, Length=123, Percent_Identity=31.7073170731707, Blast_Score=74, Evalue=5e-13,
Organism=Homo sapiens, GI84043963, Length=135, Percent_Identity=31.8518518518519, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1790835, Length=527, Percent_Identity=47.438330170778, Blast_Score=479, Evalue=1e-136,
Organism=Escherichia coli, GI1789738, Length=479, Percent_Identity=28.6012526096033, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI48994988, Length=176, Percent_Identity=33.5227272727273, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1788922, Length=158, Percent_Identity=30.379746835443, Blast_Score=95, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17533571, Length=485, Percent_Identity=28.4536082474227, Blast_Score=192, Evalue=3e-49,
Organism=Caenorhabditis elegans, GI17556745, Length=177, Percent_Identity=35.5932203389831, Blast_Score=126, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17557151, Length=137, Percent_Identity=32.8467153284672, Blast_Score=90, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17506493, Length=186, Percent_Identity=29.0322580645161, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71988819, Length=140, Percent_Identity=31.4285714285714, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71988811, Length=140, Percent_Identity=31.4285714285714, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17552884, Length=112, Percent_Identity=34.8214285714286, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17569207, Length=112, Percent_Identity=34.8214285714286, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI32566301, Length=112, Percent_Identity=34.8214285714286, Blast_Score=69, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI32566303, Length=111, Percent_Identity=35.1351351351351, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17556456, Length=170, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323098, Length=475, Percent_Identity=28.6315789473684, Blast_Score=193, Evalue=4e-50,
Organism=Saccharomyces cerevisiae, GI6322359, Length=505, Percent_Identity=27.3267326732673, Blast_Score=145, Evalue=1e-35,
Organism=Saccharomyces cerevisiae, GI6323320, Length=142, Percent_Identity=30.2816901408451, Blast_Score=81, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6324707, Length=158, Percent_Identity=30.379746835443, Blast_Score=80, Evalue=9e-16,
Organism=Saccharomyces cerevisiae, GI6320593, Length=158, Percent_Identity=30.379746835443, Blast_Score=80, Evalue=9e-16,
Organism=Saccharomyces cerevisiae, GI6325337, Length=118, Percent_Identity=31.3559322033898, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6319594, Length=118, Percent_Identity=31.3559322033898, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322937, Length=151, Percent_Identity=29.8013245033113, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24582462, Length=485, Percent_Identity=29.4845360824742, Blast_Score=210, Evalue=2e-54,
Organism=Drosophila melanogaster, GI221458488, Length=505, Percent_Identity=26.5346534653465, Blast_Score=163, Evalue=2e-40,
Organism=Drosophila melanogaster, GI78706572, Length=190, Percent_Identity=32.1052631578947, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24585709, Length=178, Percent_Identity=29.2134831460674, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24585711, Length=178, Percent_Identity=29.2134831460674, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24585713, Length=178, Percent_Identity=29.2134831460674, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28574573, Length=151, Percent_Identity=31.7880794701987, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RF3_STAA2 (A6U0C5)

Other databases:

- EMBL:   CP000736
- RefSeq:   YP_001316180.1
- ProteinModelPortal:   A6U0C5
- SMR:   A6U0C5
- STRING:   A6U0C5
- EnsemblBacteria:   EBSTAT00000015118
- GeneID:   5315133
- GenomeReviews:   CP000736_GR
- KEGG:   sah:SaurJH1_1037
- eggNOG:   COG4108
- GeneTree:   EBGT00050000024902
- HOGENOM:   HBG285678
- OMA:   LQFEVVQ
- ProtClustDB:   PRK00741
- BioCyc:   SAUR359787:SAURJH1_1037-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00072
- InterPro:   IPR009022
- InterPro:   IPR004548
- InterPro:   IPR000795
- InterPro:   IPR005225
- InterPro:   IPR004161
- InterPro:   IPR009000
- PRINTS:   PR00315
- TIGRFAMs:   TIGR00503
- TIGRFAMs:   TIGR00231

Pfam domain/function: PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2; SSF54980 EFG_III_V; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 59574; Mature: 59574

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS00301 EFACTOR_GTP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKQEVESRKTFAIISHPDAGKTTLTEKLLYFSGAIREAGTVKGKKTGKFATSDWMKVE
CCCHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
QERGISVTSSVMQFDYDDYKINILDTPGHEDFSEDTYRTLMAVDSAVMVIDCAKGIEPQT
HHCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHH
LKLFKVCKMRGIPIFTFINKLDRVGKEPFELLDEIEETLNIETYPMNWPIGMGQSFFGII
HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHH
DRKSKTIEPFRDEENILHLNDDFELEEDHAITNDSAFEQAIEELMLVEEAGEAFDNDALL
CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE
SGDLTPVFFGSALANFGVQNFLNAYVDFAPMPNARQTKEDVEVSPFDDSFSGFIFKIQAN
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEECC
MDPKHRDRIAFMRVVSGAFERGMDVTLQRTNKKQKITRSTSFMADDKETVNHAVAGDIIG
CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHCCEEE
LYDTGNYQIGDTLVGGKQTYSFQDLPQFTPEIFMKVSAKNVMKQKHFHKGIEQLVQEGAI
EEECCCEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYYKTLHTNQIILGAVGQLQFEVFEHRMKNEYNVDVVMEPVGRKIARWIENEDQITDKMN
HHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCHHHHHHHCC
TSRSILVKDRYDDLVFLFENEFATRWFEEKFLEIKLYSLL
CCCEEEEEECCCCEEEEEECHHHHHHHHHHHHEEEEEECC
>Mature Secondary Structure
MNLKQEVESRKTFAIISHPDAGKTTLTEKLLYFSGAIREAGTVKGKKTGKFATSDWMKVE
CCCHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
QERGISVTSSVMQFDYDDYKINILDTPGHEDFSEDTYRTLMAVDSAVMVIDCAKGIEPQT
HHCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHH
LKLFKVCKMRGIPIFTFINKLDRVGKEPFELLDEIEETLNIETYPMNWPIGMGQSFFGII
HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHH
DRKSKTIEPFRDEENILHLNDDFELEEDHAITNDSAFEQAIEELMLVEEAGEAFDNDALL
CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE
SGDLTPVFFGSALANFGVQNFLNAYVDFAPMPNARQTKEDVEVSPFDDSFSGFIFKIQAN
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEECC
MDPKHRDRIAFMRVVSGAFERGMDVTLQRTNKKQKITRSTSFMADDKETVNHAVAGDIIG
CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHCCEEE
LYDTGNYQIGDTLVGGKQTYSFQDLPQFTPEIFMKVSAKNVMKQKHFHKGIEQLVQEGAI
EEECCCEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QYYKTLHTNQIILGAVGQLQFEVFEHRMKNEYNVDVVMEPVGRKIARWIENEDQITDKMN
HHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCHHHHHHHCC
TSRSILVKDRYDDLVFLFENEFATRWFEEKFLEIKLYSLL
CCCEEEEEECCCCEEEEEECHHHHHHHHHHHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA