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The map label for this gene is yjfH [C]

Identifier: 15926209

GI number: 15926209

Start: 572959

End: 573705

Strand: Direct

Name: yjfH [C]

Synonym: SA0490

Alternate gene names: 15926209

Gene position: 572959-573705 (Clockwise)

Preceding gene: 15926208

Following gene: 15926210

Centisome position: 20.36

GC content: 35.34

Gene sequence:

>747_bases
GTGGAAGATACGGTTATTGTTGGTAGGCATGCTGTTAGAGAAGCGATTATTACTGGGCATCCGATAAATAAGATATTGAT
TCAAGAAGGTATTAAAAAGCAACAAATTAATGAAATTTTAAAAAATGCAAAAGATCAAAAAATTATTGTTCAAACTGTAC
CAAAATCTAAATTAGATTTTTTAGCAAATGCACCACATCAGGGTGTTGCAGCGCTTATTGCACCATATGAATATGCTGAC
TTCGATCAATTTTTAAAACAGCAAAAAGAAAAAGAAGGTTTATCGACAGTACTTATATTAGACGGCTTAGAAGACCCGCA
TAACTTGGGATCAATTTTAAGAACAGCCGATGCAACGGGAGTTGATGGTGTTATTATTCCTAAACGTCGTTCAGTTACAC
TAACGCAAACAGTTGCAAAAGCCTCAACAGGTGCAATTGAACATGTACCAGTTATTCGAGTGACAAATTTAGCTAAAACT
ATCGATGAACTAAAAGATAATGGCTTTTGGGTAGCTGGCACTGAAGCTAATAATGCAACAGATTATAGAAATCTAGAAGC
GGACATGTCATTGGCTATTGTAATTGGTAGCGAAGGACAGGGTATGAGTCGCCTAGTAAGTGATAAATGCGATTTTTATA
TTAAGATTCCAATGGTTGGACATGTAAACAGTTTGAATGCTTCGGTTGCAGCAAGTTTAATGATGTACGAAGTATTTCGA
AAAAGACATGATGTTGGAGAAATATAA

Upstream 100 bases:

>100_bases
GAAGCAGTGATAGGTTTTCTTTATTTAGAAAAAAGAGAAGAACGATTAGAGGCATTATTAAATAAAATAATAACAATAGT
AAACGAAAGGTAGTGACGAT

Downstream 100 bases:

>100_bases
TGAAAGAACGTTACTTAATCATTGATGGATACAATATGATAGGACAATCACCAACGCTAAGCGCCATTGCAAAAGAGAAT
TTAGAAGAAGCTAGAATGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MEDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFLANAPHQGVAALIAPYEYAD
FDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKT
IDELKDNGFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFR
KRHDVGEI

Sequences:

>Translated_248_residues
MEDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFLANAPHQGVAALIAPYEYAD
FDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKT
IDELKDNGFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFR
KRHDVGEI
>Mature_248_residues
MEDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFLANAPHQGVAALIAPYEYAD
FDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKT
IDELKDNGFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFR
KRHDVGEI

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=239, Percent_Identity=29.2887029288703, Blast_Score=96, Evalue=2e-20,
Organism=Escherichia coli, GI1790623, Length=246, Percent_Identity=38.2113821138211, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1790083, Length=175, Percent_Identity=31.4285714285714, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788935, Length=178, Percent_Identity=27.5280898876405, Blast_Score=74, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17555908, Length=258, Percent_Identity=26.3565891472868, Blast_Score=82, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6324775, Length=162, Percent_Identity=31.4814814814815, Blast_Score=82, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27182; Mature: 27182

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDF
CCCCEEECHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCHHHHH
LANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATG
HHCCCCCCHHHEECCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCC
VDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNAT
CCCEEECCCCCEEHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHCCCEEEEECCCCCCC
DYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFR
CCCCCCCCCEEEEEECCCCCCHHHHHHCCCCEEEEECEEECCCCCCHHHHHHHHHHHHHH
KRHDVGEI
HHCCCCCC
>Mature Secondary Structure
MEDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDF
CCCCEEECHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCHHHHH
LANAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATG
HHCCCCCCHHHEECCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCC
VDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNAT
CCCEEECCCCCEEHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHCCCEEEEECCCCCCC
DYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFR
CCCCCCCCCEEEEEECCCCCCHHHHHHCCCCEEEEECEEECCCCCCHHHHHHHHHHHHHH
KRHDVGEI
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA