Click here to switch to the map view.

The map label for this gene is ydeL [H]

Identifier: 15926195

GI number: 15926195

Start: 556112

End: 557494

Strand: Reverse

Name: ydeL [H]

Synonym: SA0476

Alternate gene names: 15926195

Gene position: 557494-556112 (Counterclockwise)

Preceding gene: 15926198

Following gene: 15926148

Centisome position: 19.81

GC content: 29.28

Gene sequence:

>1383_bases
TTGAAAAACACTTTATACCATCAACTTTATGAAAAATTAAAAAAACAAATAATTGAAGGTCAATTTAAAGAAGGCGATAA
ATTTTATTCTAAAAGACAATTAAGCAAACATTTATCTATCAGCCAAACAACCGTAGAGCATGCATATCAACTTCTATTAG
ACGAAGGTTACATTTATTCAAGACCTCGCTCTGGATATTTTGTGTCCGAAATTGAATCTTTAACAATTTTAAACAATCAA
CCTATCCCCTCTCTTTTTGATGATGATTCATATAAACCAAAAGCGAGTGATGAAGCTTATGATTATGCTTTTAATTTGGA
TGAAATAGATACGAAACATTTCCCTATAGAACTTTTCAGAAAGTATTCCAAAGATCTTTATGATACAAATCATTTAAATC
AATTACGTAGAGGACATTTTCAAGGAGAATTACATTTAAGATTTCAACTGGCATTTTATTTATTTACTAATCGTGGTGTA
ATTTGTGATCCTAATCAAATTATAATTGGCTCATCTACCGAACAATTAGTAAATCAATTAGTCGATTTACTTTATACTTC
AACGTTTATTATCGAAAAACCTAGTTATCCACCAATCAAAAATATTTTAGATAAAAAACAAGTTGAATATGAACAAATTG
AAGTTGAAGATAATGGAATAAACGTAGATGAAGTTATTAAATCACAAAAAAATATAGTATATATAACGCCTTCCCATCAA
TTTCCAACTGGATATGTGATGGACTTAAAAAAACGAACTCAATTAATACAATGGGCTCAAGAAAAAGAAGAACGATTTAT
TATAGAAGATGATTATGATTCCGAGTTTAGATATTTCGGCAAACCCATTCCAGCAATTCAAGGTCTATATTCAAGAGGAG
AAAAAGTGATTTATATCAGTACATTTTCAAAGTCTATTTTTCCTAGCTGTCGAGTTGCATATATGGTGTTACCCTATTCT
ATAATGAAAAAATATCATTCTCAAAATCACATTGAAGGCAACACTGTACCTGTTCATATGCAAAACCTTATTGCAACGTT
TATATCTTCCGGTGGTTTTGAAAGGCATTTAAATAAAATGAGACGAATTTATCGTAGAAAACTAACCTATATTTTAAAAA
GATTGAAACCTTACAAAGAGCAGCTTGATATTCAAGGTGCTGAAACGGGTATGCATTTTACAATTACAGTAAAAAATGGA
TTAACATTACAAGAGTGTCTTGATAGAGCAAACAAAGTAAAGTTAAAATTACAAGTTTATAATTTTGATGATGATCAAGA
CTATAAGAAAACCCCTAAATTTATATTAGGCTTTGGCGGTATAGACGATGATGCTTTAAAACCGCATGTAGACGCTCTAA
TAAAATCATTAATTATAAAGTAA

Upstream 100 bases:

>100_bases
ACATAAAACCCCTTTTCAAGTTGATTAAATACATTGTAATGTATAAACTGATATTTAAAAAGGTACAAAATAAGATAAAT
TTAGGAGGTCAGTTATAAAA

Downstream 100 bases:

>100_bases
CACTTCTTTGATAAAAGTTAGTGTTACTTATGCAATAGCTTGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAA
TAAAGTATATAAAAGAGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MKNTLYHQLYEKLKKQIIEGQFKEGDKFYSKRQLSKHLSISQTTVEHAYQLLLDEGYIYSRPRSGYFVSEIESLTILNNQ
PIPSLFDDDSYKPKASDEAYDYAFNLDEIDTKHFPIELFRKYSKDLYDTNHLNQLRRGHFQGELHLRFQLAFYLFTNRGV
ICDPNQIIIGSSTEQLVNQLVDLLYTSTFIIEKPSYPPIKNILDKKQVEYEQIEVEDNGINVDEVIKSQKNIVYITPSHQ
FPTGYVMDLKKRTQLIQWAQEKEERFIIEDDYDSEFRYFGKPIPAIQGLYSRGEKVIYISTFSKSIFPSCRVAYMVLPYS
IMKKYHSQNHIEGNTVPVHMQNLIATFISSGGFERHLNKMRRIYRRKLTYILKRLKPYKEQLDIQGAETGMHFTITVKNG
LTLQECLDRANKVKLKLQVYNFDDDQDYKKTPKFILGFGGIDDDALKPHVDALIKSLIIK

Sequences:

>Translated_460_residues
MKNTLYHQLYEKLKKQIIEGQFKEGDKFYSKRQLSKHLSISQTTVEHAYQLLLDEGYIYSRPRSGYFVSEIESLTILNNQ
PIPSLFDDDSYKPKASDEAYDYAFNLDEIDTKHFPIELFRKYSKDLYDTNHLNQLRRGHFQGELHLRFQLAFYLFTNRGV
ICDPNQIIIGSSTEQLVNQLVDLLYTSTFIIEKPSYPPIKNILDKKQVEYEQIEVEDNGINVDEVIKSQKNIVYITPSHQ
FPTGYVMDLKKRTQLIQWAQEKEERFIIEDDYDSEFRYFGKPIPAIQGLYSRGEKVIYISTFSKSIFPSCRVAYMVLPYS
IMKKYHSQNHIEGNTVPVHMQNLIATFISSGGFERHLNKMRRIYRRKLTYILKRLKPYKEQLDIQGAETGMHFTITVKNG
LTLQECLDRANKVKLKLQVYNFDDDQDYKKTPKFILGFGGIDDDALKPHVDALIKSLIIK
>Mature_460_residues
MKNTLYHQLYEKLKKQIIEGQFKEGDKFYSKRQLSKHLSISQTTVEHAYQLLLDEGYIYSRPRSGYFVSEIESLTILNNQ
PIPSLFDDDSYKPKASDEAYDYAFNLDEIDTKHFPIELFRKYSKDLYDTNHLNQLRRGHFQGELHLRFQLAFYLFTNRGV
ICDPNQIIIGSSTEQLVNQLVDLLYTSTFIIEKPSYPPIKNILDKKQVEYEQIEVEDNGINVDEVIKSQKNIVYITPSHQ
FPTGYVMDLKKRTQLIQWAQEKEERFIIEDDYDSEFRYFGKPIPAIQGLYSRGEKVIYISTFSKSIFPSCRVAYMVLPYS
IMKKYHSQNHIEGNTVPVHMQNLIATFISSGGFERHLNKMRRIYRRKLTYILKRLKPYKEQLDIQGAETGMHFTITVKNG
LTLQECLDRANKVKLKLQVYNFDDDQDYKKTPKFILGFGGIDDDALKPHVDALIKSLIIK

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787710, Length=373, Percent_Identity=24.6648793565684, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1790797, Length=387, Percent_Identity=25.8397932816537, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53955; Mature: 53955

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNTLYHQLYEKLKKQIIEGQFKEGDKFYSKRQLSKHLSISQTTVEHAYQLLLDEGYIYS
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEE
RPRSGYFVSEIESLTILNNQPIPSLFDDDSYKPKASDEAYDYAFNLDEIDTKHFPIELFR
CCCCCCCHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCHHHHH
KYSKDLYDTNHLNQLRRGHFQGELHLRFQLAFYLFTNRGVICDPNQIIIGSSTEQLVNQL
HHHHHHCCCHHHHHHHHCCCCCEEEEEEEEEEEEEECCCEEECCCEEEECCCHHHHHHHH
VDLLYTSTFIIEKPSYPPIKNILDKKQVEYEQIEVEDNGINVDEVIKSQKNIVYITPSHQ
HHHHHHCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCEEEEECCCC
FPTGYVMDLKKRTQLIQWAQEKEERFIIEDDYDSEFRYFGKPIPAIQGLYSRGEKVIYIS
CCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCCCCHHHHHHHHCCCEEEEEE
TFSKSIFPSCRVAYMVLPYSIMKKYHSQNHIEGNTVPVHMQNLIATFISSGGFERHLNKM
ECCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHH
RRIYRRKLTYILKRLKPYKEQLDIQGAETGMHFTITVKNGLTLQECLDRANKVKLKLQVY
HHHHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEEEEECCCCCHHHHHCCCCEEEEEEEEE
NFDDDQDYKKTPKFILGFGGIDDDALKPHVDALIKSLIIK
ECCCCCCHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKNTLYHQLYEKLKKQIIEGQFKEGDKFYSKRQLSKHLSISQTTVEHAYQLLLDEGYIYS
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEE
RPRSGYFVSEIESLTILNNQPIPSLFDDDSYKPKASDEAYDYAFNLDEIDTKHFPIELFR
CCCCCCCHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCHHHHH
KYSKDLYDTNHLNQLRRGHFQGELHLRFQLAFYLFTNRGVICDPNQIIIGSSTEQLVNQL
HHHHHHCCCHHHHHHHHCCCCCEEEEEEEEEEEEEECCCEEECCCEEEECCCHHHHHHHH
VDLLYTSTFIIEKPSYPPIKNILDKKQVEYEQIEVEDNGINVDEVIKSQKNIVYITPSHQ
HHHHHHCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCEEEEECCCC
FPTGYVMDLKKRTQLIQWAQEKEERFIIEDDYDSEFRYFGKPIPAIQGLYSRGEKVIYIS
CCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCCCCHHHHHHHHCCCEEEEEE
TFSKSIFPSCRVAYMVLPYSIMKKYHSQNHIEGNTVPVHMQNLIATFISSGGFERHLNKM
ECCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHH
RRIYRRKLTYILKRLKPYKEQLDIQGAETGMHFTITVKNGLTLQECLDRANKVKLKLQVY
HHHHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEEEEECCCCCHHHHHCCCCEEEEEEEEE
NFDDDQDYKKTPKFILGFGGIDDDALKPHVDALIKSLIIK
ECCCCCCHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]