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The map label for this gene is yabF [H]

Identifier: 15926169

GI number: 15926169

Start: 522132

End: 522668

Strand: Direct

Name: yabF [H]

Synonym: SA0450

Alternate gene names: 15926169

Gene position: 522132-522668 (Clockwise)

Preceding gene: 15926168

Following gene: 15926170

Centisome position: 18.55

GC content: 35.2

Gene sequence:

>537_bases
ATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTGTTAAACGAGCTGTTGAATGTGATACGAT
TGAAACGAATGGTAGTGCCATCAACGAACAAACTTTAGAAGTAATTAGAAATGCTCAACAAAGTCGAGGCGTTATTGTAT
TAACAGATCCAGATTTCCCAGGAGATAAAATTAGAAGTACAATTACTGAACATGTCAAAGGTGTTAAACATGCGTATATT
GATAGAGAAAAAGCTAAAAATAAAAAAGGGAAAATTGGTGTTGAACATGCCGACTTAATTGATATTAAAGAAGCGTTAAT
GCATGTTAGTTCACCCTTTGATGAAGCTTATGAATCAATTGATAAATCTGTGCTAATAGAGTTGGGGTTAATCGTTGGGA
AAGATGCAAGGCGCCGTAGAGAAATTTTAAGTAGAAAATTGCGAATCGGCCATTCCAATGGTAAGCAGTTATTGAAAAAG
TTAAATGCATTTGGTTATACCGAAGCGGATGTAAGGCAAGCTTTAGAAGATGAATGA

Upstream 100 bases:

>100_bases
TTCTTTCTCACTTTTTTAAATTAAAATATCGTACATGTGCAATACGTACGATAGAGATGGTTAGAGCTTTGAAATTAAGA
ATTGTAGGAAGGCGTTTTAA

Downstream 100 bases:

>100_bases
GGAAGTGAAAATGTTGGATAATAAAGATATTGCAACACCATCAAGAACGCGAGCGTTGTTAGATAAATATGGCTTTAATT
TTAAAAAAAGTTTAGGACAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MKINEFIVVEGRDDTERVKRAVECDTIETNGSAINEQTLEVIRNAQQSRGVIVLTDPDFPGDKIRSTITEHVKGVKHAYI
DREKAKNKKGKIGVEHADLIDIKEALMHVSSPFDEAYESIDKSVLIELGLIVGKDARRRREILSRKLRIGHSNGKQLLKK
LNAFGYTEADVRQALEDE

Sequences:

>Translated_178_residues
MKINEFIVVEGRDDTERVKRAVECDTIETNGSAINEQTLEVIRNAQQSRGVIVLTDPDFPGDKIRSTITEHVKGVKHAYI
DREKAKNKKGKIGVEHADLIDIKEALMHVSSPFDEAYESIDKSVLIELGLIVGKDARRRREILSRKLRIGHSNGKQLLKK
LNAFGYTEADVRQALEDE
>Mature_178_residues
MKINEFIVVEGRDDTERVKRAVECDTIETNGSAINEQTLEVIRNAQQSRGVIVLTDPDFPGDKIRSTITEHVKGVKHAYI
DREKAKNKKGKIGVEHADLIDIKEALMHVSSPFDEAYESIDKSVLIELGLIVGKDARRRREILSRKLRIGHSNGKQLLKK
LNAFGYTEADVRQALEDE

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 20092; Mature: 20092

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINEFIVVEGRDDTERVKRAVECDTIETNGSAINEQTLEVIRNAQQSRGVIVLTDPDFP
CCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCC
GDKIRSTITEHVKGVKHAYIDREKAKNKKGKIGVEHADLIDIKEALMHVSSPFDEAYESI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
DKSVLIELGLIVGKDARRRREILSRKLRIGHSNGKQLLKKLNAFGYTEADVRQALEDE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure
MKINEFIVVEGRDDTERVKRAVECDTIETNGSAINEQTLEVIRNAQQSRGVIVLTDPDFP
CCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCC
GDKIRSTITEHVKGVKHAYIDREKAKNKKGKIGVEHADLIDIKEALMHVSSPFDEAYESI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
DKSVLIELGLIVGKDARRRREILSRKLRIGHSNGKQLLKKLNAFGYTEADVRQALEDE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]