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The map label for this gene is hsdS

Identifier: 15926110

GI number: 15926110

Start: 452549

End: 453760

Strand: Direct

Name: hsdS

Synonym: SA0392

Alternate gene names: NA

Gene position: 452549-453760 (Clockwise)

Preceding gene: 15926109

Following gene: 15926111

Centisome position: 16.08

GC content: 29.21

Gene sequence:

>1212_bases
ATGAGTAATACACAAAAGAAAAATGTGCCAGAGTTGAGATTCCCAGGGTTTGAAGGCGAATGGGAAGAGAAGCAGTTGGG
GGATCTTACAGATAGAGTAATTAGGAAAAATAAAAACTTAGAATCGAAAAAGCCTTTAACAATATCCGGACAGTTAGGTT
TAATTGATCAAACAGAATATTTTAGTAAATCAGTTTCGTCGAAAAATCTAGAAAATTATACACTAATAAAGAATGGAGAA
TTCGCGTATAACAAAAGTTATTCTAATGGATACCCATTAGGGGCTATTAAAAGATTAACTAGATATGATAGTGGTGTATT
GTCCTCTTTGTATATTTGTTTTTCTATTAAAAGTGAAATGTCTAAAGACTTCATGGAAGCATATTTTGATTCGACACACT
GGTATAGAGAAGTTTCTGGAATTGCAGTTGAGGGTGCAAGAAATCACGGATTATTAAATGTTTCTGTGAATGATTTTTTT
ACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGA
ATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTATATGCAGAAAATTTTCTCACAGGAACTGCGAT
TCAAAGATGAGAATGGTGAAGATTATCCAGATTGGGAAAATAGCAAAATAGAAAAATATTTAAAAGAGAGAAACGAACGT
TCTGACAAAGGGCAAATGCTTTCAGTAACTATAAATAGTGGCATTATAAAATTTAGTGAATTGGATAGAAAAGATAATTC
AAGTAAAGATAAAAGTAATTATAAAGTAGTTAGGAAAAATGATATTGCATATAATTCTATGAGAATGTGGCAAGGGGCTA
GTGGTAAATCAAATTATAATGGGATTGTTAGCCCTGCATATACTGTGCTTTATCCAACACAAAATACTAGCTCATTATTT
ATTGGATATAAGTTTAAAACACATAGAATGATTCATAAATTTAAAATTAATTCACAAGGATTAACATCAGATACATGGAA
CTTAAAATATAAACAATTAAAAAATATAAATATAGATATACCTGTATTGGAGGAACAAGAAAAGATAGGTGATTTCTTTA
AAAAAATGGATATATTGATAAGTAAACAGAAAATGAAAATTGAAATATTAGAAAAAGAGAAACAATCCTTTTTACAAAAA
ATGTTCTTATAA

Upstream 100 bases:

>100_bases
TTAGATCAAGTCCAACAAGATTTGAAAAATATCGACAAAGAAATCGCAGAAATTGAACAAGAAATCAATGCATACCTGAA
AGAACTTGGGGTGTTGAAAG

Downstream 100 bases:

>100_bases
CTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAA
ACGAACATTAAATTTAGGCA

Product: restriction modification system specificity subunit

Products: NA

Alternate protein names: Restriction System DNA Specificity Subunit; Restriction System DNA Specificity Domain Protein; Specificity Determinant HsdS; Restriction System DNA Specificity Domain; Restriction Endonuclease S Subunit; Type I R/M System Specificity Subunit; Restriction System Specificity Subunit; Type-I Specificity Determinant Subunit; Type I Restriction Specificity Protein; Type I Site-Specific Deoxyribonuclease; Type I Restriction S Subunit; Type I Restriction- System Specificity Subunit S; Type I Restriction- System; Type I Restriction- System S Subunit; Type IC HsdS Subunit; Type I Restriction- S Subunit EcoA Family; Type I Restriction- System DNA Specificity Subunit; Type I Restriction- System Subunit; Type I Restriction System S Subunit; Type I Restriction- S Subunit EcoA Family Protein; Type I RM System Specificity Subunit HsdIB; Type I Restriction System Specificity Protein HsdS; Type I Restriction- System Protein; HsdS-Like Protein Of Type I Restriction- System; Type I Restriction DNA Specificity Domain Protein; Type I Restriction System; Type I Restriction Endonuclease S Subunit; Restriction System Subunit S; Type I Restriction- System Specificity System Partial; Type I Restriction DNA Specificity Protein; Type I DNA Specificity S Subunit; Restriction And System Specificity Protein; Type I Restriction- System Restriction Subunit; Type I Restriction Specificity Subunit; Type I Restriction- System Specificity Determinant; Restriction- Type I S Subunit; Specificity Subunit; Type I Restriction- System S Protein; Type I Restriction- S Subunit; Restriction Endonuclease S Subunits

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MSNTQKKNVPELRFPGFEGEWEEKQLGDLTDRVIRKNKNLESKKPLTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGE
FAYNKSYSNGYPLGAIKRLTRYDSGVLSSLYICFSIKSEMSKDFMEAYFDSTHWYREVSGIAVEGARNHGLLNVSVNDFF
TILIKYPSLEEQQKIGKFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKERNER
SDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLF
IGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQK
MFL

Sequences:

>Translated_403_residues
MSNTQKKNVPELRFPGFEGEWEEKQLGDLTDRVIRKNKNLESKKPLTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGE
FAYNKSYSNGYPLGAIKRLTRYDSGVLSSLYICFSIKSEMSKDFMEAYFDSTHWYREVSGIAVEGARNHGLLNVSVNDFF
TILIKYPSLEEQQKIGKFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKERNER
SDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLF
IGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQK
MFL
>Mature_402_residues
SNTQKKNVPELRFPGFEGEWEEKQLGDLTDRVIRKNKNLESKKPLTISGQLGLIDQTEYFSKSVSSKNLENYTLIKNGEF
AYNKSYSNGYPLGAIKRLTRYDSGVLSSLYICFSIKSEMSKDFMEAYFDSTHWYREVSGIAVEGARNHGLLNVSVNDFFT
ILIKYPSLEEQQKIGKFFSKLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKERNERS
DKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASGKSNYNGIVSPAYTVLYPTQNTSSLFI
GYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNINIDIPVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKM
FL

Specific function: Unknown

COG id: COG0732

COG function: function code V; Restriction endonuclease S subunits

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47136; Mature: 47005

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTQKKNVPELRFPGFEGEWEEKQLGDLTDRVIRKNKNLESKKPLTISGQLGLIDQTEY
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHH
FSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSGVLSSLYICFSIKSEM
HHHHHCCCCCCCEEEEECCCEEECCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHH
SKDFMEAYFDSTHWYREVSGIAVEGARNHGLLNVSVNDFFTILIKYPSLEEQQKIGKFFS
HHHHHHHHHCCHHHHHHHCCEEEECCCCCCEEEEEHHHEEEEEEECCCCHHHHHHHHHHH
KLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKERNER
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC
SDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASGKSNYN
CCCCCEEEEEECCCEEEEHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCC
GIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNINIDI
CCCCCEEEEEEECCCCCEEEEEEEEHHHHEEEEEEECCCCCCCCCCCCCHHHHCCCCCCC
PVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL
CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNTQKKNVPELRFPGFEGEWEEKQLGDLTDRVIRKNKNLESKKPLTISGQLGLIDQTEY
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHH
FSKSVSSKNLENYTLIKNGEFAYNKSYSNGYPLGAIKRLTRYDSGVLSSLYICFSIKSEM
HHHHHCCCCCCCEEEEECCCEEECCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHH
SKDFMEAYFDSTHWYREVSGIAVEGARNHGLLNVSVNDFFTILIKYPSLEEQQKIGKFFS
HHHHHHHHHCCHHHHHHHCCEEEECCCCCCEEEEEHHHEEEEEEECCCCHHHHHHHHHHH
KLDRQIELEEQKLELLQQQKKGYMQKIFSQELRFKDENGEDYPDWENSKIEKYLKERNER
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC
SDKGQMLSVTINSGIIKFSELDRKDNSSKDKSNYKVVRKNDIAYNSMRMWQGASGKSNYN
CCCCCEEEEEECCCEEEEHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCC
GIVSPAYTVLYPTQNTSSLFIGYKFKTHRMIHKFKINSQGLTSDTWNLKYKQLKNINIDI
CCCCCEEEEEEECCCCCEEEEEEEEHHHHEEEEEEECCCCCCCCCCCCCHHHHCCCCCCC
PVLEEQEKIGDFFKKMDILISKQKMKIEILEKEKQSFLQKMFL
CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA