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The map label for this gene is ydiF [H]

Identifier: 15925938

GI number: 15925938

Start: 273754

End: 275316

Strand: Reverse

Name: ydiF [H]

Synonym: SA0227

Alternate gene names: 15925938

Gene position: 275316-273754 (Counterclockwise)

Preceding gene: 15925940

Following gene: 15925937

Centisome position: 9.78

GC content: 36.92

Gene sequence:

>1563_bases
TTGAAACAAATCACATGGCACGACTTACAACATATCATTAAAGATGGTGATGTGATTGGTTTACCAGCATTAGCTGTAGC
CAACTTACCCGCCGAAGTTCTACGTGCTGTGTTAGCGCAACATGACACATATCATACGCCCAAAGATTTAACGTTTATAT
TAGCGAATGATATCCATAGTTTAGGTGCCGCACCGGATTTAGATGATTTTATAGAACGTCGCATGATTAAACGTGTCATT
ATGAGCATTTTAACGGCTTCTTCCAAAACGGCACAAGCAATGAAAAATAATGACATTGAAGCTTATTTTTTACCACAAGG
TATCATTGCAACTCATTATCGTCAGAGTAATCAATTATTACCTGGAGTTATTACTAAAATCGGATTAAACACAGCTGTTG
ATCCTAGATACGGTGGCGGTAAAGTAAATACACGAACAACTGATGATTTAGTTTCATTAGTAACCATCAACGATGAAACA
TACTTACATTACACATTCCCTAGCGTTGATGTGGCACTACTGAGAGGAACATACGCAGATCAACAAGGTAACATTTATTT
AACTCAAGAAGCGTACTTGAGCGAGTGTTATCATGTCGCATTAAACGCGAAAGCCAATCATGGGAAAGTTATTGTACAAG
TTAAAGCTTTAGTTGACGACTATCAACTAAAACCGAATGAAGTTGTTATCCCAGGAAATCTTGTCGATTATGTATACGTC
ACAGAAGATGAAAAGAATCACCGCCAAGTAATTCAGAGTCATTATTTACCAGCCTTGTCTGGAGAAGAACGAATTGATGG
AATACCTGAACCCGCATTACCTTTTAATAGTCGCAAATTGATTCTCCGACGTGCTGCTCAGTTTTTAACTTATGGCGATA
CAATTAGCATCGGTTATGGCATCAATAATGAACTCTCTAATTTATTGCACGAAGAATGTGTTGAACATGATGTGCAACCG
ATTCTAGATGTTGGCATTTTCGGTGGATTCGTTGGGAGTCGTGAACATTTTGGTATGAATTACAATGCAGATGTGCGCAT
GCCTCATGATCGAGCATGGGATTTTATTTATAACAATGGTGTATCAGTTGCCTATCTTAGCTTTGCTGAGGTTGATCAAT
ACGGCAATGTCAACGTGTCTTACTTCAATGACCGACTAAATGGATGTGGTGGCTTTATAGACATTACGCAATCTGTAAAT
AAAATTATCTTTTCAGGTACTTTTGTAGCTGGCAGTCATGTCTCATGTCATAATCAACGATTAAACATTGAAACTGAAGG
ACAAAACCAGAAATTTGTATCAGATGTGAGCCATATCGACTTTAATGCACAATATTCACAATTACTCGAGCAAGAAGTCT
ATTTTGTTACTGATCGTGCAGTATTCGAGCTCACCAATCAAGGCTTGAAACTAATTGAAATTGCACCAGGTCTTGATTTG
CATAAAGATATTTTGAATCAAATGGCTTTTAAACCAATTATTGCTGATCATTTAAAATTAATTGATACCAGCATTTACAA
AGAAAAATGGGGACAACTTAAACAATCAATTCATAAAGTATGA

Upstream 100 bases:

>100_bases
TTCTAATTGATTTTAAACGTCGTTATGTTATATTTCTTGTAAGGGTTTACACAAAGTGTAAAAACGCTATATTTTATCAA
ATGTGATGGAGGTGACTTGC

Downstream 100 bases:

>100_bases
AAGTGAAGCTAAAGGGGGTATACTAATGAATTTCGATTGGATAAAAACGCGTTCAGACTTCGATGATGACAAGCCTGCCG
TTATTGATCACGCAAAACAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MKQITWHDLQHIIKDGDVIGLPALAVANLPAEVLRAVLAQHDTYHTPKDLTFILANDIHSLGAAPDLDDFIERRMIKRVI
MSILTASSKTAQAMKNNDIEAYFLPQGIIATHYRQSNQLLPGVITKIGLNTAVDPRYGGGKVNTRTTDDLVSLVTINDET
YLHYTFPSVDVALLRGTYADQQGNIYLTQEAYLSECYHVALNAKANHGKVIVQVKALVDDYQLKPNEVVIPGNLVDYVYV
TEDEKNHRQVIQSHYLPALSGEERIDGIPEPALPFNSRKLILRRAAQFLTYGDTISIGYGINNELSNLLHEECVEHDVQP
ILDVGIFGGFVGSREHFGMNYNADVRMPHDRAWDFIYNNGVSVAYLSFAEVDQYGNVNVSYFNDRLNGCGGFIDITQSVN
KIIFSGTFVAGSHVSCHNQRLNIETEGQNQKFVSDVSHIDFNAQYSQLLEQEVYFVTDRAVFELTNQGLKLIEIAPGLDL
HKDILNQMAFKPIIADHLKLIDTSIYKEKWGQLKQSIHKV

Sequences:

>Translated_520_residues
MKQITWHDLQHIIKDGDVIGLPALAVANLPAEVLRAVLAQHDTYHTPKDLTFILANDIHSLGAAPDLDDFIERRMIKRVI
MSILTASSKTAQAMKNNDIEAYFLPQGIIATHYRQSNQLLPGVITKIGLNTAVDPRYGGGKVNTRTTDDLVSLVTINDET
YLHYTFPSVDVALLRGTYADQQGNIYLTQEAYLSECYHVALNAKANHGKVIVQVKALVDDYQLKPNEVVIPGNLVDYVYV
TEDEKNHRQVIQSHYLPALSGEERIDGIPEPALPFNSRKLILRRAAQFLTYGDTISIGYGINNELSNLLHEECVEHDVQP
ILDVGIFGGFVGSREHFGMNYNADVRMPHDRAWDFIYNNGVSVAYLSFAEVDQYGNVNVSYFNDRLNGCGGFIDITQSVN
KIIFSGTFVAGSHVSCHNQRLNIETEGQNQKFVSDVSHIDFNAQYSQLLEQEVYFVTDRAVFELTNQGLKLIEIAPGLDL
HKDILNQMAFKPIIADHLKLIDTSIYKEKWGQLKQSIHKV
>Mature_520_residues
MKQITWHDLQHIIKDGDVIGLPALAVANLPAEVLRAVLAQHDTYHTPKDLTFILANDIHSLGAAPDLDDFIERRMIKRVI
MSILTASSKTAQAMKNNDIEAYFLPQGIIATHYRQSNQLLPGVITKIGLNTAVDPRYGGGKVNTRTTDDLVSLVTINDET
YLHYTFPSVDVALLRGTYADQQGNIYLTQEAYLSECYHVALNAKANHGKVIVQVKALVDDYQLKPNEVVIPGNLVDYVYV
TEDEKNHRQVIQSHYLPALSGEERIDGIPEPALPFNSRKLILRRAAQFLTYGDTISIGYGINNELSNLLHEECVEHDVQP
ILDVGIFGGFVGSREHFGMNYNADVRMPHDRAWDFIYNNGVSVAYLSFAEVDQYGNVNVSYFNDRLNGCGGFIDITQSVN
KIIFSGTFVAGSHVSCHNQRLNIETEGQNQKFVSDVSHIDFNAQYSQLLEQEVYFVTDRAVFELTNQGLKLIEIAPGLDL
HKDILNQMAFKPIIADHLKLIDTSIYKEKWGQLKQSIHKV

Specific function: Unknown

COG id: COG4670

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae AtoD [H]

Homologues:

Organism=Escherichia coli, GI1787985, Length=482, Percent_Identity=35.2697095435685, Blast_Score=280, Evalue=2e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014388
- InterPro:   IPR004165 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: NA

Molecular weight: Translated: 58358; Mature: 58358

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQITWHDLQHIIKDGDVIGLPALAVANLPAEVLRAVLAQHDTYHTPKDLTFILANDIHS
CCCCCHHHHHHHHCCCCEECCCHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEHHHHH
LGAAPDLDDFIERRMIKRVIMSILTASSKTAQAMKNNDIEAYFLPQGIIATHYRQSNQLL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCC
PGVITKIGLNTAVDPRYGGGKVNTRTTDDLVSLVTINDETYLHYTFPSVDVALLRGTYAD
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCEEEEHCCCCCC
QQGNIYLTQEAYLSECYHVALNAKANHGKVIVQVKALVDDYQLKPNEVVIPGNLVDYVYV
CCCCEEEEHHHHHHHHHEEEEECCCCCCEEEEEEEEHHHCCCCCCCCEEECCCEEEEEEE
TEDEKNHRQVIQSHYLPALSGEERIDGIPEPALPFNSRKLILRRAAQFLTYGDTISIGYG
ECCCHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC
INNELSNLLHEECVEHDVQPILDVGIFGGFVGSREHFGMNYNADVRMPHDRAWDFIYNNG
CCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHCCCCCCCCEECCCCCCCHHEECCC
VSVAYLSFAEVDQYGNVNVSYFNDRLNGCGGFIDITQSVNKIIFSGTFVAGSHVSCHNQR
CEEEEEEHHHHHCCCCCEEEEECCCCCCCCCCEEHHHHHHHHEEECEEEECCCCEECCCE
LNIETEGQNQKFVSDVSHIDFNAQYSQLLEQEVYFVTDRAVFELTNQGLKLIEIAPGLDL
EEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHEEEECHHHHHHHHCCCEEEEECCCCCH
HKDILNQMAFKPIIADHLKLIDTSIYKEKWGQLKQSIHKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKQITWHDLQHIIKDGDVIGLPALAVANLPAEVLRAVLAQHDTYHTPKDLTFILANDIHS
CCCCCHHHHHHHHCCCCEECCCHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEHHHHH
LGAAPDLDDFIERRMIKRVIMSILTASSKTAQAMKNNDIEAYFLPQGIIATHYRQSNQLL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCC
PGVITKIGLNTAVDPRYGGGKVNTRTTDDLVSLVTINDETYLHYTFPSVDVALLRGTYAD
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCEEEEHCCCCCC
QQGNIYLTQEAYLSECYHVALNAKANHGKVIVQVKALVDDYQLKPNEVVIPGNLVDYVYV
CCCCEEEEHHHHHHHHHEEEEECCCCCCEEEEEEEEHHHCCCCCCCCEEECCCEEEEEEE
TEDEKNHRQVIQSHYLPALSGEERIDGIPEPALPFNSRKLILRRAAQFLTYGDTISIGYG
ECCCHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC
INNELSNLLHEECVEHDVQPILDVGIFGGFVGSREHFGMNYNADVRMPHDRAWDFIYNNG
CCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHCCCCCCCCEECCCCCCCHHEECCC
VSVAYLSFAEVDQYGNVNVSYFNDRLNGCGGFIDITQSVNKIIFSGTFVAGSHVSCHNQR
CEEEEEEHHHHHCCCCCEEEEECCCCCCCCCCEEHHHHHHHHEEECEEEECCCCEECCCE
LNIETEGQNQKFVSDVSHIDFNAQYSQLLEQEVYFVTDRAVFELTNQGLKLIEIAPGLDL
EEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHEEEECHHHHHHHHCCCEEEEECCCCCH
HKDILNQMAFKPIIADHLKLIDTSIYKEKWGQLKQSIHKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 3541912; 7984428 [H]