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The map label for this gene is insF1 [H]

Identifier: 15924794

GI number: 15924794

Start: 1933171

End: 1933740

Strand: Reverse

Name: insF1 [H]

Synonym: SAV1804

Alternate gene names: 15924794

Gene position: 1933740-1933171 (Counterclockwise)

Preceding gene: 15924795

Following gene: 15924788

Centisome position: 67.18

GC content: 29.47

Gene sequence:

>570_bases
ATGAAAGCTAAATACAAAAATCATCAAATAGAAACTAATGAAAAACGAATTAAAAATCATTTGAATCGCGCTTTTAATAG
AGAACAACCAATGGAGACATTAGTAAGTGATTTGACATATGTAAAAGTCGGAGGAACATGGCATTACATATGTTTATTTA
TAGATCTATTTAATAGAGAAATTGTTGGTTACAGTGCAGGTAAAAATAAGGACGCCAATTTAGTATCAAAAGCAATCAGC
AGAATAAATCATAATCTTGAACAAATCAAACTATTCCACACTGATAGAGACAAAGAATTTGATAATCATTTGATAGATGA
AGTCCTAGAAACATTTAAAATAAAACGTTCATTAAGTACCAAAGGTTGTCCTTATGATAACGCAGTTGCGGAAGCAACGA
TGAAAGCAATGAAAACAGAATTTGTAAAACAAATGCAATTTGAAAACTTAGAACAGTTAGAAACAGAATTATTTGATTAT
GTAAATTGGTACAACAATTTTAGACCACATTCTTCATTACAGTATTTGACGCCAGTGGCATTTAAAAATATACACATGAA
AACTGTCTAA

Upstream 100 bases:

>100_bases
CTTTAGTACAAGACGAATTAAAAATCATTTAAATGACAAGGGTCTCACTGTATCTGGACAAAAGATAGGTCGATTATGAA
AAAATCTAGTTTCTGTTTAT

Downstream 100 bases:

>100_bases
AAAATGTTGACATACCACTAAGTGAACTATTAAAACCAAAAGAAATTTAATACAATTCAAGACCATGCAAACTCATTTAT
AAACATTGTCCGTTTATAGA

Product: putative transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MKAKYKNHQIETNEKRIKNHLNRAFNREQPMETLVSDLTYVKVGGTWHYICLFIDLFNREIVGYSAGKNKDANLVSKAIS
RINHNLEQIKLFHTDRDKEFDNHLIDEVLETFKIKRSLSTKGCPYDNAVAEATMKAMKTEFVKQMQFENLEQLETELFDY
VNWYNNFRPHSSLQYLTPVAFKNIHMKTV

Sequences:

>Translated_189_residues
MKAKYKNHQIETNEKRIKNHLNRAFNREQPMETLVSDLTYVKVGGTWHYICLFIDLFNREIVGYSAGKNKDANLVSKAIS
RINHNLEQIKLFHTDRDKEFDNHLIDEVLETFKIKRSLSTKGCPYDNAVAEATMKAMKTEFVKQMQFENLEQLETELFDY
VNWYNNFRPHSSLQYLTPVAFKNIHMKTV
>Mature_189_residues
MKAKYKNHQIETNEKRIKNHLNRAFNREQPMETLVSDLTYVKVGGTWHYICLFIDLFNREIVGYSAGKNKDANLVSKAIS
RINHNLEQIKLFHTDRDKEFDNHLIDEVLETFKIKRSLSTKGCPYDNAVAEATMKAMKTEFVKQMQFENLEQLETELFDY
VNWYNNFRPHSSLQYLTPVAFKNIHMKTV

Specific function: Involved in the transposition of the insertion sequence IS3 [H]

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=157, Percent_Identity=29.2993630573248, Blast_Score=75, Evalue=4e-14,
Organism=Escherichia coli, GI1788405, Length=182, Percent_Identity=28.021978021978, Blast_Score=90, Evalue=8e-20,
Organism=Escherichia coli, GI1787263, Length=182, Percent_Identity=28.021978021978, Blast_Score=90, Evalue=8e-20,
Organism=Escherichia coli, GI1786753, Length=182, Percent_Identity=28.021978021978, Blast_Score=90, Evalue=8e-20,
Organism=Escherichia coli, GI1786570, Length=182, Percent_Identity=28.021978021978, Blast_Score=90, Evalue=8e-20,
Organism=Escherichia coli, GI1786490, Length=182, Percent_Identity=28.021978021978, Blast_Score=90, Evalue=8e-20,
Organism=Escherichia coli, GI1789981, Length=184, Percent_Identity=29.3478260869565, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 22340; Mature: 22340

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS50994 INTEGRASE ; PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKYKNHQIETNEKRIKNHLNRAFNREQPMETLVSDLTYVKVGGTWHYICLFIDLFNRE
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEECCCHHHHHHHHHHHHHH
IVGYSAGKNKDANLVSKAISRINHNLEQIKLFHTDRDKEFDNHLIDEVLETFKIKRSLST
HCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
KGCPYDNAVAEATMKAMKTEFVKQMQFENLEQLETELFDYVNWYNNFRPHSSLQYLTPVA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
FKNIHMKTV
HHCEEECCC
>Mature Secondary Structure
MKAKYKNHQIETNEKRIKNHLNRAFNREQPMETLVSDLTYVKVGGTWHYICLFIDLFNRE
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEECCCHHHHHHHHHHHHHH
IVGYSAGKNKDANLVSKAISRINHNLEQIKLFHTDRDKEFDNHLIDEVLETFKIKRSLST
HCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
KGCPYDNAVAEATMKAMKTEFVKQMQFENLEQLETELFDYVNWYNNFRPHSSLQYLTPVA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
FKNIHMKTV
HHCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987844; 9278503 [H]