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The map label for this gene is ygeY [C]

Identifier: 15924741

GI number: 15924741

Start: 1880323

End: 1881732

Strand: Reverse

Name: ygeY [C]

Synonym: SAV1751

Alternate gene names: 15924741

Gene position: 1881732-1880323 (Counterclockwise)

Preceding gene: 15924742

Following gene: 15924740

Centisome position: 65.37

GC content: 34.61

Gene sequence:

>1410_bases
ATGTGGAAAGAAAAAGTTCAACAATACGAAGATCAAATCATTAATGACTTAAAAGGATTATTAGCAATTGAAAGTGTGAG
AGATGATGCAAAAGCATCAGAAGACGCACCAGTTGGTCCAGGTCCTCGTAAGGCATTAGACTACATGTATGAAATTGCAC
ATAGAGATGGATTTACAACACATGATGTGGATCATATTGCAGGAAGAATTGAGGCAGGTAAAGGAAATGACGTATTAGGT
ATCTTATGTCATGTTGACGTTGTTCCTGCTGGTGATGGATGGGATAGTAATCCGTTCGAGCCGGTTGTAACAGAAGATGC
TATCATAGCTAGAGGTACACTTGATGACAAAGGTCCAACAATTGCTGCTTATTATGCAATTAAGATATTAGAAGATATGA
ATGTGGATTGGAAGAAACGTATTCATATGATTATTGGTACGGATGAAGAATCTGATTGGAAATGTACGGATCGCTATTTT
AAAACAGAAGAAATGCCAACATTAGGTTTTGCACCAGATGCAGAATTTCCATGTATTCATGGTGAAAAAGGCATTACAAC
ATTTGATTTAGTTCAAAATAAACTTACTGAAGATCAAGATGAACCTGATTATGAATTAATAACTTTTAAATCTGGTGAAC
GTTACAACATGGTACCTGATCATGCAGAAGCAAGAGTGCTTGTTAAAGAAAATATGACAGATGTTATTCAAGACTTTGAG
TACTTTTTAGAACAAAATCATTTACAAGGTGATAGTACTGTTGATAGTGGCATTCTAGTTTTAACAGTTGAAGGTAAAGC
GGTTCATGGTATGGATCCATCTATCGGTGTGAATGCGGGTCTTTACTTACTAAAATTCTTAGCATCATTAAATCTTGATA
ATAATGCACAAGCGTTTGTAGCATTTAGTAATCGCTACTTATTTAATTCAGATTTTGGTGAAAAGATGGGAATGAAATTC
CATACAGATGTCATGGGTGACGTGACAACTAACATTGGTGTTATTACATATGATAATGAAAACGCAGGTCTTTTCGGTAT
CAACTTACGCTACCCAGAAGGATTTGAATTTGAAAAAGCTATGGATCGTTTTGCAAATGAGATTCAACAATATGGCTTTG
AAGTGAAATTAGGTAAAGTCCAACCACCACATTATGTTGATAAAAATGATCCTTTTGTACAAAAGTTAGTTACTGCATAT
AGAAATCAAACAAATGATATGACTGAACCTTATACTATAGGTGGCGGTACTTATGCGAGAAACTTAGACAAGGGTGTAGC
ATTTGGCGCAATGTTTAGTGATTCTGAAGATTTAATGCATCAGAAAAATGAATATATCACTAAAAAACAGTTATTTAACG
CAACTAGTATTTACTTAGAAGCAATTTATTCATTATGCGTGGAGGAATAA

Upstream 100 bases:

>100_bases
TTTTGTTCCTTTTTATTATTTTCTGACATCTTATTGTAGTTTTTATATCTTTTCATGTAAAATAGAATTTAACTTATAGA
AAAAAGGAAGTCGATTTCGA

Downstream 100 bases:

>100_bases
TATATGGAAAAAATTTTTTTAAATGGTGAGTTTGTAAGTCCAAGTGAAGCAAAGGTTTCATACAACGACAGAGGATACGT
ATTTGGCGATGGTATTTATG

Product: dipeptidase PepV

Products: succinate; LL-2,6-diaminoheptanedioate

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MWKEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDHIAGRIEAGKGNDVLG
ILCHVDVVPAGDGWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRYF
KTEEMPTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFE
YFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKF
HTDVMGDVTTNIGVITYDNENAGLFGINLRYPEGFEFEKAMDRFANEIQQYGFEVKLGKVQPPHYVDKNDPFVQKLVTAY
RNQTNDMTEPYTIGGGTYARNLDKGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYLEAIYSLCVEE

Sequences:

>Translated_469_residues
MWKEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDHIAGRIEAGKGNDVLG
ILCHVDVVPAGDGWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRYF
KTEEMPTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFE
YFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKF
HTDVMGDVTTNIGVITYDNENAGLFGINLRYPEGFEFEKAMDRFANEIQQYGFEVKLGKVQPPHYVDKNDPFVQKLVTAY
RNQTNDMTEPYTIGGGTYARNLDKGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYLEAIYSLCVEE
>Mature_469_residues
MWKEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDHIAGRIEAGKGNDVLG
ILCHVDVVPAGDGWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRYF
KTEEMPTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFE
YFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKF
HTDVMGDVTTNIGVITYDNENAGLFGINLRYPEGFEFEKAMDRFANEIQQYGFEVKLGKVQPPHYVDKNDPFVQKLVTAY
RNQTNDMTEPYTIGGGTYARNLDKGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYLEAIYSLCVEE

Specific function: Unknown

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PEPVL_STAA3 (Q2FFY7)

Other databases:

- EMBL:   CP000255
- RefSeq:   YP_494391.1
- ProteinModelPortal:   Q2FFY7
- SMR:   Q2FFY7
- STRING:   Q2FFY7
- EnsemblBacteria:   EBSTAT00000037505
- GeneID:   3912864
- GenomeReviews:   CP000255_GR
- KEGG:   saa:SAUSA300_1697
- eggNOG:   COG0624
- GeneTree:   EBGT00050000024078
- HOGENOM:   HBG515732
- OMA:   DYLHVAG
- ProtClustDB:   PRK07318
- InterPro:   IPR010964
- InterPro:   IPR002933
- InterPro:   IPR011650
- PANTHER:   PTHR11014:SF6
- TIGRFAMs:   TIGR01887

Pfam domain/function: PF01546 Peptidase_M20; SSF55031 Peptidase_M20_dimer

EC number: 3.5.1.18

Molecular weight: Translated: 52825; Mature: 52825

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: PS00758 ARGE_DAPE_CPG2_1; PS00759 ARGE_DAPE_CPG2_2

Important sites: ACT_SITE 86-86 ACT_SITE 149-149

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
HDVDHIAGRIEAGKGNDVLGILCHVDVVPAGDGWDSNPFEPVVTEDAIIARGTLDDKGPT
CCHHHHHCEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCEECCCCEEEECCCCCCCCE
IAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRYFKTEEMPTLGFAPDAEFPCIH
EEEHHHHHHHHHCCCCHHHEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEE
GEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFE
CCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHH
YFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFV
HHHHHCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEE
AFSNRYLFNSDFGEKMGMKFHTDVMGDVTTNIGVITYDNENAGLFGINLRYPEGFEFEKA
EEECCEEEECCCHHHCCCEEECCHHCCHHCCEEEEEEECCCCCEEEEEECCCCCCCHHHH
MDRFANEIQQYGFEVKLGKVQPPHYVDKNDPFVQKLVTAYRNQTNDMTEPYTIGGGTYAR
HHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCHHHH
NLDKGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYLEAIYSLCVEE
HHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MWKEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
HDVDHIAGRIEAGKGNDVLGILCHVDVVPAGDGWDSNPFEPVVTEDAIIARGTLDDKGPT
CCHHHHHCEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCEECCCCEEEECCCCCCCCE
IAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRYFKTEEMPTLGFAPDAEFPCIH
EEEHHHHHHHHHCCCCHHHEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEE
GEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFE
CCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHH
YFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFV
HHHHHCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEE
AFSNRYLFNSDFGEKMGMKFHTDVMGDVTTNIGVITYDNENAGLFGINLRYPEGFEFEKA
EEECCEEEECCCHHHCCCEEECCHHCCHHCCEEEEEEECCCCCEEEEEECCCCCCCHHHH
MDRFANEIQQYGFEVKLGKVQPPHYVDKNDPFVQKLVTAYRNQTNDMTEPYTIGGGTYAR
HHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCHHHH
NLDKGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYLEAIYSLCVEE
HHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N-succinyl-LL-2,6-diaminoheptanedioate; H2O

Specific reaction: N-succinyl-LL-2,6-diaminoheptanedioate + H2O = succinate + LL-2,6-diaminoheptanedioate

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA