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The map label for this gene is ccpA

Identifier: 15924726

GI number: 15924726

Start: 1862108

End: 1863052

Strand: Reverse

Name: ccpA

Synonym: SAV1736

Alternate gene names: 15924726

Gene position: 1863052-1862108 (Counterclockwise)

Preceding gene: 15924727

Following gene: 15924723

Centisome position: 64.72

GC content: 32.7

Gene sequence:

>945_bases
ATGGCCACAGTGTCGCGTGTTGTTAATGGGAACCAAAATGTTAAAGCAGAAACTAAAAATAAAGTTAACGAAGTCATTAA
GCGTTTGAATTATCGTCCAAATGCTGTTGCTAGAGGTTTAGCTAGTAAAAAGACAACAACAGTAGGTGTGATCATTCCAG
ATATATCTAATATCTATTATTCACAACTTGCTCGTGGACTTGAAGATATTGCAACAATGTATAAATATCACTCAATTATT
TCAAATTCAGATAACGATCCTGAAAAGGAAAAAGAAATTTTTAATAACTTATTAAGTAAACAGGTTGATGGTATTATTTT
CCTTGGTGGTACAATTACTGAAGAAATGAAAGAATTGATAAATCAATCATCTGTACCTGTAGTAGTATCAGGAACAAATG
GTAAGGATGCACATATAGCATCAGTTAATATTGATTTTACTGAAGCTGCGAAAGAAATTACGGGAGAATTAATTGAAAAA
GGCGCTAAATCATTTGCTTTAGTAGGTGGAGAACATTCTAAAAAAGCTCAAGAAGATGTTTTAGAAGGTTTAACTGAAGT
GTTAAATAAAAATGGCCTTCAATTAGGTGATACATTGAATTGTTCTGGTGCTGAAAGTTATAAAGAAGGCGTAAAAGCTT
TTGCTAAAATGAAAGGCAATTTGCCAGATGCCATTTTATGTATCAGCGACGAAGAAGCAATTGGTATTATGCATAGTGCA
ATGGATGCTGGTATTAAAGTTCCAGAGGAATTACAAATTATTAGTTTCAATAATACACGATTAGTTGAGATGGTTAGACC
ACAACTTTCTAGTGTTATTCAACCATTATATGATATCGGTGCAGTAGGGATGCGCTTATTAACAAAATATATGAACGATG
AAAAGATAGAAGAACCAAATGTAGTTTTACCTCACAGAATTGAATACCGAGGAACTACAAAATAA

Upstream 100 bases:

>100_bases
AAATGAAATGAAAACATGTTATTATAATGAATAAAACGTTTACAAGGAGGAAATTATGACAGTTACTATATATGATGTAG
CAAGAGAAGCGCGTGTCTCT

Downstream 100 bases:

>100_bases
ATTCACAAAATTAGGCATTCATCTAACGACCCAAATTATATGGGTGTTGGAAGAATGCCTTTTATTTATCTTTTAAAATC
GTTGCAGATTAGGTTACTTA

Product: catabolite control protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLARGLEDIATMYKYHSII
SNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNIDFTEAAKEITGELIEK
GAKSFALVGGEHSKKAQEDVLEGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFAKMKGNLPDAILCISDEEAIGIMHSA
MDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPNVVLPHRIEYRGTTK

Sequences:

>Translated_314_residues
MATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLARGLEDIATMYKYHSII
SNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNIDFTEAAKEITGELIEK
GAKSFALVGGEHSKKAQEDVLEGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFAKMKGNLPDAILCISDEEAIGIMHSA
MDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPNVVLPHRIEYRGTTK
>Mature_313_residues
ATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLARGLEDIATMYKYHSIIS
NSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNIDFTEAAKEITGELIEKG
AKSFALVGGEHSKKAQEDVLEGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFAKMKGNLPDAILCISDEEAIGIMHSAM
DAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPNVVLPHRIEYRGTTK

Specific function: Transcriptional regulator involved in both the repression of carbohydrate utilization genes and in the positive regulation of genes involved in excretion of excess carbon

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1790369, Length=315, Percent_Identity=27.3015873015873, Blast_Score=151, Evalue=5e-38,
Organism=Escherichia coli, GI1790194, Length=314, Percent_Identity=25.1592356687898, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI48994940, Length=290, Percent_Identity=24.8275862068966, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1787948, Length=314, Percent_Identity=25.1592356687898, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789068, Length=283, Percent_Identity=26.8551236749117, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789202, Length=287, Percent_Identity=26.4808362369338, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1790715, Length=314, Percent_Identity=25.1592356687898, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1788474, Length=289, Percent_Identity=24.9134948096886, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1787580, Length=299, Percent_Identity=24.4147157190635, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787906, Length=319, Percent_Identity=21.0031347962382, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786268, Length=321, Percent_Identity=24.9221183800623, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1786540, Length=322, Percent_Identity=24.8447204968944, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789456, Length=330, Percent_Identity=24.5454545454545, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790689, Length=282, Percent_Identity=25.177304964539, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCPA_STAAC (Q5HF38)

Other databases:

- EMBL:   CP000046
- RefSeq:   YP_186619.1
- ProteinModelPortal:   Q5HF38
- SMR:   Q5HF38
- STRING:   Q5HF38
- EnsemblBacteria:   EBSTAT00000009896
- GeneID:   3236753
- GenomeReviews:   CP000046_GR
- KEGG:   sac:SACOL1786
- TIGR:   SACOL1786
- eggNOG:   COG1609
- GeneTree:   EBGT00050000023815
- HOGENOM:   HBG753640
- OMA:   ELELINT
- ProtClustDB:   CLSK885525
- BioCyc:   SAUR93062:SACOL1786-MONOMER
- GO:   GO:0005622
- InterPro:   IPR006377
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761
- PRINTS:   PR00036
- SMART:   SM00354
- TIGRFAMs:   TIGR01481

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 34368; Mature: 34237

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: PS00356 HTH_LACI_1; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYY
CCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEEECCHHHHHH
SQLARGLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELI
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHH
NQSSVPVVVSGTNGKDAHIASVNIDFTEAAKEITGELIEKGAKSFALVGGEHSKKAQEDV
CCCCCCEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCHHEEEECCCCCHHHHHHH
LEGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFAKMKGNLPDAILCISDEEAIGIMHSA
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHH
MDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPN
HHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VVLPHRIEYRGTTK
EECCCEECCCCCCC
>Mature Secondary Structure 
ATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYY
CCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEEECCHHHHHH
SQLARGLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELI
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHH
NQSSVPVVVSGTNGKDAHIASVNIDFTEAAKEITGELIEKGAKSFALVGGEHSKKAQEDV
CCCCCCEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCHHEEEECCCCCHHHHHHH
LEGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFAKMKGNLPDAILCISDEEAIGIMHSA
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHH
MDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPN
HHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VVLPHRIEYRGTTK
EECCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA