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The map label for this gene is scdA

Identifier: 15923249

GI number: 15923249

Start: 303543

End: 304217

Strand: Direct

Name: scdA

Synonym: SAV0259

Alternate gene names: 15923249

Gene position: 303543-304217 (Clockwise)

Preceding gene: 15923248

Following gene: 15923250

Centisome position: 10.55

GC content: 32.3

Gene sequence:

>675_bases
ATGATAAATAAAAATGACATAGTAGCAGATATAGTAATAGATTATCCGAAAGCAGCAGATATTTTTAGAAGCGTAGGTAT
AGACTTTTGTTGCGGTGGACAAGTAAGTATAGAAGCAGCATCCTTAGAAAAGAAAAATGTAGATTTGAACGAATTATTAC
AGCGTCTCAATGACGTTGAACAAACGAATACACCAGGTTCGCTTAACCCTAAATTTTTAAATGTTTCGTCACTTATTCAA
TATATTCAAGCAGCATATCATGAACCTCTTAGAGAAGAATTTAAAAATTTAACACCTTATGTGACGAAATTATCGAAAGT
ACATGGACCTAACCATCCATATTTAGTCGAGTTAAAAGAAACATATGATACATTTAAAAGTGGCATGTTAGAGCATATGC
AAAAAGAAGATGATGTTGATTTTCCAAAACTAATTAAATATGAACAAGGTGAAGTAGTAAACGATATTAATACAGTGATT
GATGATTTAGTATCTGATCACATTGCAACGGGACAATTGTTAGTGAAAATGAGCGATTTAACATCTAGCTATGAACCACC
GATAGAGGCATGTGGTACGTGGCGACTCGTTTATCAGAGATTAAAAGCACTTGAAGTGTTAACACATGAGCATGTTCATT
TAGAGAATCATGTTTTATTTAAAAAAGTATCATAA

Upstream 100 bases:

>100_bases
GGTTTTATTTTGCTATTTATGAAATGATTATGACATTTCCCTGATTTTCATTTTCATATACATTAAATTGTATACACTGA
AAATGAGGAGGTCGTCTATA

Downstream 100 bases:

>100_bases
ATAACGCGATTAGAAACTGTTGGCAAAGTAATGTCAGCAGTTTTTCGCTATACTTAACAGAAATTTAGTGATATGAACAG
CATTATTTGAAAAGAAAAAT

Product: cell wall biosynthesis protein ScdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MINKNDIVADIVIDYPKAADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQ
YIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKSGMLEHMQKEDDVDFPKLIKYEQGEVVNDINTVI
DDLVSDHIATGQLLVKMSDLTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS

Sequences:

>Translated_224_residues
MINKNDIVADIVIDYPKAADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQ
YIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKSGMLEHMQKEDDVDFPKLIKYEQGEVVNDINTVI
DDLVSDHIATGQLLVKMSDLTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
>Mature_224_residues
MINKNDIVADIVIDYPKAADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQ
YIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKSGMLEHMQKEDDVDFPKLIKYEQGEVVNDINTVI
DDLVSDHIATGQLLVKMSDLTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS

Specific function: Involved in peptidoglycan cross-linking. Required for normal cell growth and development

COG id: COG2846

COG function: function code D; Regulator of cell morphogenesis and NO signaling

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scdA family

Homologues:

Organism=Escherichia coli, GI1790654, Length=230, Percent_Identity=27.8260869565217, Blast_Score=91, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCDA_STAA1 (A7WXS1)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001440848.1
- ProteinModelPortal:   A7WXS1
- SMR:   A7WXS1
- STRING:   A7WXS1
- EnsemblBacteria:   EBSTAT00000005009
- GeneID:   5561644
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_0258
- eggNOG:   COG2846
- GeneTree:   EBGT00050000025196
- HOGENOM:   HBG308681
- OMA:   GNPINAM
- ProtClustDB:   PRK13276
- BioCyc:   SAUR418127:SAHV_0258-MONOMER
- HAMAP:   MF_01156
- InterPro:   IPR007500
- InterPro:   IPR019903
- InterPro:   IPR012312
- TIGRFAMs:   TIGR03652

Pfam domain/function: PF01814 Hemerythrin; PF04405 ScdA_N

EC number: NA

Molecular weight: Translated: 25468; Mature: 25468

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINKNDIVADIVIDYPKAADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVE
CCCCCCEEEEEEECCCHHHHHHHHCCCCEECCCCEEEEHHHCCCCCCCHHHHHHHHHHHH
QTNTPGSLNPKFLNVSSLIQYIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKE
HCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEHH
TYDTFKSGMLEHMQKEDDVDFPKLIKYEQGEVVNDINTVIDDLVSDHIATGQLLVKMSDL
HHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHH
TSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
>Mature Secondary Structure
MINKNDIVADIVIDYPKAADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVE
CCCCCCEEEEEEECCCHHHHHHHHCCCCEECCCCEEEEHHHCCCCCCCHHHHHHHHHHHH
QTNTPGSLNPKFLNVSSLIQYIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKE
HCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEHH
TYDTFKSGMLEHMQKEDDVDFPKLIKYEQGEVVNDINTVIDDLVSDHIATGQLLVKMSDL
HHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHH
TSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA