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The map label for this gene is rpl40e

Identifier: 15920384

GI number: 15920384

Start: 226993

End: 227163

Strand: Reverse

Name: rpl40e

Synonym: STS025

Alternate gene names: 15920384

Gene position: 227163-226993 (Counterclockwise)

Preceding gene: 15920387

Following gene: 15920382

Centisome position: 8.43

GC content: 36.26

Gene sequence:

>171_bases
ATGCCACTCACCGATCCAGTAAAGCTTCAAATAGTTCAACAGCGTATATTTTTAAAGAAAGTCTGTAGAGATTGTGGGGC
ATTAAATTCCGTAAGAGCTACAAAATGCAGAAGATGCCATAGTAAAAATCTAAGACCAAAGAAGAAAGAATTACCAGCTA
AGAAAGGATAG

Upstream 100 bases:

>100_bases
TACACAAATATAATCTAGCGGTATCTTCATCCTCTTTCAACTCCGCTTTTACCGCAATACTTTTTTTGAACTGACTCATA
TTATTGAATCGGGGTTAAAA

Downstream 100 bases:

>100_bases
CCTAAATTTTTATTCCTATTAAGGCAAGTCTATCTCGTATACTTTTCGAATTTTCTTCAAAAAGATCTATATGAGACTCT
AAGTATTTTTTATCTATATT

Product: 50S ribosomal protein L40e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 56; Mature: 55

Protein sequence:

>56_residues
MPLTDPVKLQIVQQRIFLKKVCRDCGALNSVRATKCRRCHSKNLRPKKKELPAKKG

Sequences:

>Translated_56_residues
MPLTDPVKLQIVQQRIFLKKVCRDCGALNSVRATKCRRCHSKNLRPKKKELPAKKG
>Mature_55_residues
PLTDPVKLQIVQQRIFLKKVCRDCGALNSVRATKCRRCHSKNLRPKKKELPAKKG

Specific function: Unknown

COG id: COG1552

COG function: function code J; Ribosomal protein L40E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L40e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL40_SULTO (Q976I5)

Other databases:

- EMBL:   BA000023
- RefSeq:   NP_376053.1
- ProteinModelPortal:   Q976I5
- SMR:   Q976I5
- GeneID:   1458092
- GenomeReviews:   BA000023_GR
- KEGG:   sto:STS025
- NMPDR:   fig|273063.1.peg.221
- HOGENOM:   HBG391745
- OMA:   SKNLRPK
- ProtClustDB:   PRK04136
- BioCyc:   STOK273063:STS025-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00788
- InterPro:   IPR001975

Pfam domain/function: PF01020 Ribosomal_L40e

EC number: NA

Molecular weight: Translated: 6431; Mature: 6300

Theoretical pI: Translated: 11.31; Mature: 11.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
8.9 %Cys+Met (Translated Protein)
7.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTDPVKLQIVQQRIFLKKVCRDCGALNSVRATKCRRCHSKNLRPKKKELPAKKG
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHCCCCCCC
>Mature Secondary Structure 
PLTDPVKLQIVQQRIFLKKVCRDCGALNSVRATKCRRCHSKNLRPKKKELPAKKG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572479