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The map label for this gene is yfdE [H]

Identifier: 15920246

GI number: 15920246

Start: 89412

End: 90530

Strand: Reverse

Name: yfdE [H]

Synonym: ST0067

Alternate gene names: 15920246

Gene position: 90530-89412 (Counterclockwise)

Preceding gene: 15920247

Following gene: 15920244

Centisome position: 3.36

GC content: 33.87

Gene sequence:

>1119_bases
ATGAATAGAGTCCTTGAGCTGGGTAGTAATATCTCAGCACCTTTAATTGGGGAAATATTAGCCGATTTAGGATTTGATGT
AATAAAGATTGAGCCCCCTCCCTATGGTGATGATAGAAGGAGAATTAAACCAGAGATTAATGGGATTAGTGTTTATTTTG
CCAGTACTAATAGAGGAAAGAGAAGTATTGTAATTAACCTCAAGACAAATGAAGGTTATGAAATTTTCAAAAAGTTGGTA
AAATCTGCTAAGATATTGATTACTAATTATAGGCCCTCTGCACTTAAAAGATTAAAAATAGATTACGAGACTTTGAAGGA
AATTAACCCCAACATAATATACTGTTCAATAACGGGGTTTGGAAATTTCTCTAAAGAAGCCGATAATCCTGCTTATGATG
CAACAATATTAGCCTTGAGCGGTTTAATGGATATGACTGGAGAGGAAAAAGGGCCTCCTGCAAAATTCGCCACATCAATT
TCAGATATAATAACTGCTTTAATGGGAACTATACTAATCTTAGCATCGTTAAATAAGGGGGAATCGGTCTTCATTGACTT
ACCCATGATTTATACACAATTTTACTTGATGTTAGAAGATGCATATATGTACCTTAATACTAACGTAATACCTAAGAGAA
TGGGTTCTGCACACAGGTATTTAGTACCTTATCAAGCGTTTAAAACAGCTGACGGTTATATTTACGTAGCTGTTTTCACT
GATGAACAATATTTTAAGCTATGCAAAGCTCTAGGGAGAGAAGACTTAGCTATGTTCGATACTAACCAGAAGAGGCTTGA
AAATAGGGAGTATATAGTAAATGAATTACAAAAAATATTTGAGAATAACACTAGAGAGTATTGGGTAAAGGTATTAAGTG
ATGCTGATGTACCAGTAGCTCCAGTGCTTAACTTGGCTGAAGCTTTCCAAAGGTATGGTAATAAATTAGTTTATGAGGTT
AACGGAATGAAGTATATTATGTTTCCTTTTAATAAAAAGGAGACTGTTGCTCCAAGATTAGGCGAACATACTAGAGAGAT
TCTACTTGAATTAGGATATGACAATGACGAGATAAATAATTTAATTAAAAAAGGAGTAATAATGGAAGCAAGTAAATAA

Upstream 100 bases:

>100_bases
TCAAAGGGGAGAAAAGGTTGTGGAATTTGATAGGGTATTCATGGTTAGAAAGAAAGGGGTAAGCTGGACTGGTGAAAAGA
AAGAATGAGATGATGACAAT

Downstream 100 bases:

>100_bases
CAAATAATACTCAATCAACTAGAAGTATAAGTTAATAGATTATTTTCGTAAGACCTCTAATTAAAAGTTATTTTTCCTAA
GTAGGTTAAATCTTAAATTG

Product: alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MNRVLELGSNISAPLIGEILADLGFDVIKIEPPPYGDDRRRIKPEINGISVYFASTNRGKRSIVINLKTNEGYEIFKKLV
KSAKILITNYRPSALKRLKIDYETLKEINPNIIYCSITGFGNFSKEADNPAYDATILALSGLMDMTGEEKGPPAKFATSI
SDIITALMGTILILASLNKGESVFIDLPMIYTQFYLMLEDAYMYLNTNVIPKRMGSAHRYLVPYQAFKTADGYIYVAVFT
DEQYFKLCKALGREDLAMFDTNQKRLENREYIVNELQKIFENNTREYWVKVLSDADVPVAPVLNLAEAFQRYGNKLVYEV
NGMKYIMFPFNKKETVAPRLGEHTREILLELGYDNDEINNLIKKGVIMEASK

Sequences:

>Translated_372_residues
MNRVLELGSNISAPLIGEILADLGFDVIKIEPPPYGDDRRRIKPEINGISVYFASTNRGKRSIVINLKTNEGYEIFKKLV
KSAKILITNYRPSALKRLKIDYETLKEINPNIIYCSITGFGNFSKEADNPAYDATILALSGLMDMTGEEKGPPAKFATSI
SDIITALMGTILILASLNKGESVFIDLPMIYTQFYLMLEDAYMYLNTNVIPKRMGSAHRYLVPYQAFKTADGYIYVAVFT
DEQYFKLCKALGREDLAMFDTNQKRLENREYIVNELQKIFENNTREYWVKVLSDADVPVAPVLNLAEAFQRYGNKLVYEV
NGMKYIMFPFNKKETVAPRLGEHTREILLELGYDNDEINNLIKKGVIMEASK
>Mature_372_residues
MNRVLELGSNISAPLIGEILADLGFDVIKIEPPPYGDDRRRIKPEINGISVYFASTNRGKRSIVINLKTNEGYEIFKKLV
KSAKILITNYRPSALKRLKIDYETLKEINPNIIYCSITGFGNFSKEADNPAYDATILALSGLMDMTGEEKGPPAKFATSI
SDIITALMGTILILASLNKGESVFIDLPMIYTQFYLMLEDAYMYLNTNVIPKRMGSAHRYLVPYQAFKTADGYIYVAVFT
DEQYFKLCKALGREDLAMFDTNQKRLENREYIVNELQKIFENNTREYWVKVLSDADVPVAPVLNLAEAFQRYGNKLVYEV
NGMKYIMFPFNKKETVAPRLGEHTREILLELGYDNDEINNLIKKGVIMEASK

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=389, Percent_Identity=34.9614395886889, Blast_Score=224, Evalue=8e-59,
Organism=Homo sapiens, GI300863124, Length=415, Percent_Identity=32.7710843373494, Blast_Score=214, Evalue=1e-55,
Organism=Homo sapiens, GI300863126, Length=385, Percent_Identity=32.4675324675325, Blast_Score=184, Evalue=8e-47,
Organism=Homo sapiens, GI13376042, Length=415, Percent_Identity=29.8795180722892, Blast_Score=170, Evalue=2e-42,
Organism=Homo sapiens, GI42794625, Length=393, Percent_Identity=24.4274809160305, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI266456254, Length=393, Percent_Identity=24.4274809160305, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI266458393, Length=281, Percent_Identity=24.9110320284698, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI266458397, Length=253, Percent_Identity=24.901185770751, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI42822893, Length=138, Percent_Identity=29.7101449275362, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI266458395, Length=138, Percent_Identity=29.7101449275362, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI87082093, Length=338, Percent_Identity=32.2485207100592, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1788717, Length=413, Percent_Identity=29.0556900726392, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1786222, Length=400, Percent_Identity=24.75, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=313, Percent_Identity=24.2811501597444, Blast_Score=98, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=313, Percent_Identity=24.6006389776358, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24648431, Length=393, Percent_Identity=35.3689567430025, Blast_Score=238, Evalue=4e-63,
Organism=Drosophila melanogaster, GI24585488, Length=388, Percent_Identity=25.5154639175258, Blast_Score=100, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42299; Mature: 42299

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRVLELGSNISAPLIGEILADLGFDVIKIEPPPYGDDRRRIKPEINGISVYFASTNRGK
CCCHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCC
RSIVINLKTNEGYEIFKKLVKSAKILITNYRPSALKRLKIDYETLKEINPNIIYCSITGF
EEEEEEEECCCCHHHHHHHHCCCEEEEECCCHHHHHHHCCCHHHHHHCCCCEEEEEEECC
GNFSKEADNPAYDATILALSGLMDMTGEEKGPPAKFATSISDIITALMGTILILASLNKG
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
ESVFIDLPMIYTQFYLMLEDAYMYLNTNVIPKRMGSAHRYLVPYQAFKTADGYIYVAVFT
CEEEEECHHHHHHHHHHHHHHEEEEECCCCHHHCCCCCEEEEEHHHHCCCCCEEEEEEEC
DEQYFKLCKALGREDLAMFDTNQKRLENREYIVNELQKIFENNTREYWVKVLSDADVPVA
CHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHH
PVLNLAEAFQRYGNKLVYEVNGMKYIMFPFNKKETVAPRLGEHTREILLELGYDNDEINN
HHHHHHHHHHHHCCEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
LIKKGVIMEASK
HHHCCEEEECCC
>Mature Secondary Structure
MNRVLELGSNISAPLIGEILADLGFDVIKIEPPPYGDDRRRIKPEINGISVYFASTNRGK
CCCHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCC
RSIVINLKTNEGYEIFKKLVKSAKILITNYRPSALKRLKIDYETLKEINPNIIYCSITGF
EEEEEEEECCCCHHHHHHHHCCCEEEEECCCHHHHHHHCCCHHHHHHCCCCEEEEEEECC
GNFSKEADNPAYDATILALSGLMDMTGEEKGPPAKFATSISDIITALMGTILILASLNKG
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
ESVFIDLPMIYTQFYLMLEDAYMYLNTNVIPKRMGSAHRYLVPYQAFKTADGYIYVAVFT
CEEEEECHHHHHHHHHHHHHHEEEEECCCCHHHCCCCCEEEEEHHHHCCCCCEEEEEEEC
DEQYFKLCKALGREDLAMFDTNQKRLENREYIVNELQKIFENNTREYWVKVLSDADVPVA
CHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHH
PVLNLAEAFQRYGNKLVYEVNGMKYIMFPFNKKETVAPRLGEHTREILLELGYDNDEINN
HHHHHHHHHHHHCCEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
LIKKGVIMEASK
HHHCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]