| Definition | Sulfolobus tokodaii str. 7 chromosome, complete genome. |
|---|---|
| Accession | NC_003106 |
| Length | 2,694,756 |
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The map label for this gene is yprA [H]
Identifier: 15920172
GI number: 15920172
Start: 5970
End: 8819
Strand: Reverse
Name: yprA [H]
Synonym: ST0003
Alternate gene names: 15920172
Gene position: 8819-5970 (Counterclockwise)
Preceding gene: 15920174
Following gene: 15920170
Centisome position: 0.33
GC content: 38.67
Gene sequence:
>2850_bases ATGATCTGTGATTCTTCGAGTATACTTTCTAGCTTGGATCTAGTGTTCCAGAAGTTCTCAGACTCTGGGGTACCATATAC TACGACTAACGTTAAGTTCAGGGATGTCTTACCCACTCTATGTTCACGTAATGTAAGGCTATGCGATCTAAATATGTATC AGCATCAGCTCGAGGCAATAAATAAACTTATGCAAGGTAAAAACCTAGTAGTAAACGCTGAAACTGGAGGAGGTAAGACT GAGATATGGGTATCATATGCGTTAGAAATGCAGTTAAAGGGAGAATTTAACGTACTTGCAATATATCCCACAAAAGCCCT TGCTGGAGATCAGATTGAGAGGATAGTAAAATATTATATCGAGGCTGGGTTTTCCGTATCTAAGCAAGTAAAAGGGAAGA CTAAGATAGTGGAAGTATACTATGGTGACGTTATAAAGTATGATGGAGATGTGTCAAACTACATTCAATCTGTCAAGAGG GCAAAGACATTACTCACAAACCCTGAAGTTGTGAAGAACGCTCTTTTTCAGAACCATAAAATAAGTGACTTCTTGAAGAA GGTGAGGCTAATAGTAGTAGACGAGTTCGACTTCTATGGTAGCAGTAAGAGTACAGTCTTGCTTCATATTATTAAAGGTA TTATAGACAAGTTCGGGATTAAACCTCAGATAGTAATAATGAGTGCAACGCTTTCTGACCCAGAAGTAGTAAAGCCCTTT TTCGACGTTGAAATTATAGGGGGTAAGTCATTCAGGCCCGCAAATGATACTTACATAGTTTTAGGTAAGAGGGATGAGTT AAACGCAATAAGTAAAGCGTTAAACGTAAGCTTTGATGATTTAGTTAAAAACTTTTTTAAATACGCATCAGATCCCAAAA AAGAGATATACTTCTTACAACTATTTAAAGATAATGCCCAGTTACTCCCAGAGTATTTGGATAAGTTGAAGGGCTGTGAC GAACTGACTATAATCTTTTCTAGGTCTATAAGTGAGGCGAATAACTTAGTAGGAAAATTAGGGGGGAAGGTAAACTATGA CGGGACTGCTCCAGTTGCTGTCCATCATTCTGGGATAGACAAGTATGTAAGGCAACAAGTAGAGAATGACATGAGGAGTG GGAAACTCAAGGTAGTCGTAACTGTGAAGACGCTATTACAAGGTATAGATGTAGGGAATGTTACTAGAGTAGTCCACGTT GGGATCCCAGATAGCGTAAGGGAGTTTATTCAGAGGGAAGGGAGAAAGGGGAGGATGGCTAGTATTAAGAGGACAGAGAG CGTGATCTTTCCATTATCGCTCTCAGACGCTGTACTCCTCGAGGACTACTCTACCTCACTTAAGGAATGGTTATCATTGG GATCAGAGTCATTAATACTACTTCCAGATAACGAGTTCCTAAAACTGATAGACGTAATAAGAGGTATATTAAATGATAGA GAGTTCCTTAAGAGTGTAGGTATAACTGGTACGTTACCTCAGATAAGCTTTTATGAGCAATTACATAAGACCGTCCCTAA GCTACTCTTTGACGGAAAGAACTGTAATGTCGTAGATAAGCTTAACTATAGGGATGTAGTTGAGAAGCATCAATTAGGCT GTATAGACCCTATGCTCAATGCGATAGTAGTGAGAAACTCAGTTATAAACGGTAAGAGGCATGTAATAGAGACATCTGAC TTCTCTTCTAGCATCATGTGTAATAATATTAACATAAGTTCACATGTAGTTAATAATGCAATAGCCTACTATGAGGACAT CTGTTTTTCTTGGAAACAACATCCGGACTTAAATGGCGACATAGAAAGAGGGAAGGTATGGTCTAAGGTAAGCCTTGACG TACTCTTTGAAGGTGACGGTGGGTTTAAACAAGTCCATGAGATAGCGAGAAAGGTCTTTTGGTATATAGAATCCCGAAGA AAGATAGGTCAAGAGTATAAGGTAGAGAAGATAGAGTTAGAGTACACACCGTCACCCAATCTTAAGTATGACTTCCTCAC ATACGTATATGCGAGTGAGCTTGAACCAGATGACGTTAATAAAGTGGATAAGGGGATGTATTTCATTCTAGCCCTTTTAA GGCTTAACTACGGGATAGACTTAGGCTTAATTAACTTTGGAGTCTCCAACTCTGGGATATTAAAGATATGGGAGAGCGAA CCTACCGCATTACTAAAACGTTTAAGGGAGATGAAGAAAGTGAAGGTGAGAGGTACGGAACTTGACTGTAAGAAGTTATT GGATGACGTAAGAAATGCCCAGCCTTTTAGAAGGCTTGAATTAGTATTAAAATACCTAGACCCATATACATTTAATAACT TTGATTTTAACGAAGTAAAGGCAATTGCAGAGAGGTTTGTCCATTATCTCTGCAACACTATTCCTATCCAACTTCAAGTA ATTAGTGGTACAATGATACCTAAGTCACCTCTAATACGGAGTATCATTATAGACTCTTTTGGAGGGAAATACGCGGTTTC ATCTCCTACTGGAGAGATAAGTATATTTGACAATGAGGAAGAGGCGGTAAAGGAAGCTGCAAAACTTAACATAGAGTTTA CTGACGCTATTGTAGTACCTTATGGTGTGAGTATAGGAAAGAAGTATAAGTTTCAGAACGAAGTCGTTTATATAGATAAG GAGATAAATAGACTTCTGGGAGGGCCTATAACTCCATCAAAGTTTAGGGAGCTAGTGCTGAATGATGATAGTCTATTAAA GGAGGAGAATGAGGCAGATAACAGCATTACGAGAGGAGAAGAGGTTGAGCTAACTAAAATATTTAGGAAGAGAGCGGAGA CAATAAGACTCATGATAAACTTGTGGAAGGCATATTTAACAGATAAATAG
Upstream 100 bases:
>100_bases AATGTGAATATAGAAATATAAATACCATAATGATGACACTATGTCCACACTAGGGCTCAATTAAGTAATCTTTATAAATA TAAATTTGTAGTTTTTATTA
Downstream 100 bases:
>100_bases AGGTTATTCGTCTTTTATATTTACGAGATGTATAGTAATCCCGATAAATAGGTCTGACTACATCTTTGAGAGTTCTTTTT CTTCAATAGTCAGAAGTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 949; Mature: 949
Protein sequence:
>949_residues MICDSSSILSSLDLVFQKFSDSGVPYTTTNVKFRDVLPTLCSRNVRLCDLNMYQHQLEAINKLMQGKNLVVNAETGGGKT EIWVSYALEMQLKGEFNVLAIYPTKALAGDQIERIVKYYIEAGFSVSKQVKGKTKIVEVYYGDVIKYDGDVSNYIQSVKR AKTLLTNPEVVKNALFQNHKISDFLKKVRLIVVDEFDFYGSSKSTVLLHIIKGIIDKFGIKPQIVIMSATLSDPEVVKPF FDVEIIGGKSFRPANDTYIVLGKRDELNAISKALNVSFDDLVKNFFKYASDPKKEIYFLQLFKDNAQLLPEYLDKLKGCD ELTIIFSRSISEANNLVGKLGGKVNYDGTAPVAVHHSGIDKYVRQQVENDMRSGKLKVVVTVKTLLQGIDVGNVTRVVHV GIPDSVREFIQREGRKGRMASIKRTESVIFPLSLSDAVLLEDYSTSLKEWLSLGSESLILLPDNEFLKLIDVIRGILNDR EFLKSVGITGTLPQISFYEQLHKTVPKLLFDGKNCNVVDKLNYRDVVEKHQLGCIDPMLNAIVVRNSVINGKRHVIETSD FSSSIMCNNINISSHVVNNAIAYYEDICFSWKQHPDLNGDIERGKVWSKVSLDVLFEGDGGFKQVHEIARKVFWYIESRR KIGQEYKVEKIELEYTPSPNLKYDFLTYVYASELEPDDVNKVDKGMYFILALLRLNYGIDLGLINFGVSNSGILKIWESE PTALLKRLREMKKVKVRGTELDCKKLLDDVRNAQPFRRLELVLKYLDPYTFNNFDFNEVKAIAERFVHYLCNTIPIQLQV ISGTMIPKSPLIRSIIIDSFGGKYAVSSPTGEISIFDNEEEAVKEAAKLNIEFTDAIVVPYGVSIGKKYKFQNEVVYIDK EINRLLGGPITPSKFRELVLNDDSLLKEENEADNSITRGEEVELTKIFRKRAETIRLMINLWKAYLTDK
Sequences:
>Translated_949_residues MICDSSSILSSLDLVFQKFSDSGVPYTTTNVKFRDVLPTLCSRNVRLCDLNMYQHQLEAINKLMQGKNLVVNAETGGGKT EIWVSYALEMQLKGEFNVLAIYPTKALAGDQIERIVKYYIEAGFSVSKQVKGKTKIVEVYYGDVIKYDGDVSNYIQSVKR AKTLLTNPEVVKNALFQNHKISDFLKKVRLIVVDEFDFYGSSKSTVLLHIIKGIIDKFGIKPQIVIMSATLSDPEVVKPF FDVEIIGGKSFRPANDTYIVLGKRDELNAISKALNVSFDDLVKNFFKYASDPKKEIYFLQLFKDNAQLLPEYLDKLKGCD ELTIIFSRSISEANNLVGKLGGKVNYDGTAPVAVHHSGIDKYVRQQVENDMRSGKLKVVVTVKTLLQGIDVGNVTRVVHV GIPDSVREFIQREGRKGRMASIKRTESVIFPLSLSDAVLLEDYSTSLKEWLSLGSESLILLPDNEFLKLIDVIRGILNDR EFLKSVGITGTLPQISFYEQLHKTVPKLLFDGKNCNVVDKLNYRDVVEKHQLGCIDPMLNAIVVRNSVINGKRHVIETSD FSSSIMCNNINISSHVVNNAIAYYEDICFSWKQHPDLNGDIERGKVWSKVSLDVLFEGDGGFKQVHEIARKVFWYIESRR KIGQEYKVEKIELEYTPSPNLKYDFLTYVYASELEPDDVNKVDKGMYFILALLRLNYGIDLGLINFGVSNSGILKIWESE PTALLKRLREMKKVKVRGTELDCKKLLDDVRNAQPFRRLELVLKYLDPYTFNNFDFNEVKAIAERFVHYLCNTIPIQLQV ISGTMIPKSPLIRSIIIDSFGGKYAVSSPTGEISIFDNEEEAVKEAAKLNIEFTDAIVVPYGVSIGKKYKFQNEVVYIDK EINRLLGGPITPSKFRELVLNDDSLLKEENEADNSITRGEEVELTKIFRKRAETIRLMINLWKAYLTDK >Mature_949_residues MICDSSSILSSLDLVFQKFSDSGVPYTTTNVKFRDVLPTLCSRNVRLCDLNMYQHQLEAINKLMQGKNLVVNAETGGGKT EIWVSYALEMQLKGEFNVLAIYPTKALAGDQIERIVKYYIEAGFSVSKQVKGKTKIVEVYYGDVIKYDGDVSNYIQSVKR AKTLLTNPEVVKNALFQNHKISDFLKKVRLIVVDEFDFYGSSKSTVLLHIIKGIIDKFGIKPQIVIMSATLSDPEVVKPF FDVEIIGGKSFRPANDTYIVLGKRDELNAISKALNVSFDDLVKNFFKYASDPKKEIYFLQLFKDNAQLLPEYLDKLKGCD ELTIIFSRSISEANNLVGKLGGKVNYDGTAPVAVHHSGIDKYVRQQVENDMRSGKLKVVVTVKTLLQGIDVGNVTRVVHV GIPDSVREFIQREGRKGRMASIKRTESVIFPLSLSDAVLLEDYSTSLKEWLSLGSESLILLPDNEFLKLIDVIRGILNDR EFLKSVGITGTLPQISFYEQLHKTVPKLLFDGKNCNVVDKLNYRDVVEKHQLGCIDPMLNAIVVRNSVINGKRHVIETSD FSSSIMCNNINISSHVVNNAIAYYEDICFSWKQHPDLNGDIERGKVWSKVSLDVLFEGDGGFKQVHEIARKVFWYIESRR KIGQEYKVEKIELEYTPSPNLKYDFLTYVYASELEPDDVNKVDKGMYFILALLRLNYGIDLGLINFGVSNSGILKIWESE PTALLKRLREMKKVKVRGTELDCKKLLDDVRNAQPFRRLELVLKYLDPYTFNNFDFNEVKAIAERFVHYLCNTIPIQLQV ISGTMIPKSPLIRSIIIDSFGGKYAVSSPTGEISIFDNEEEAVKEAAKLNIEFTDAIVVPYGVSIGKKYKFQNEVVYIDK EINRLLGGPITPSKFRELVLNDDSLLKEENEADNSITRGEEVELTKIFRKRAETIRLMINLWKAYLTDK
Specific function: Unknown
COG id: COG1205
COG function: function code R; Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787016, Length=397, Percent_Identity=22.9219143576826, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6320497, Length=383, Percent_Identity=27.9373368146214, Blast_Score=112, Evalue=4e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR018973 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD; PF09369 DUF1998; PF00271 Helicase_C [H]
EC number: NA
Molecular weight: Translated: 107645; Mature: 107645
Theoretical pI: Translated: 7.90; Mature: 7.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MICDSSSILSSLDLVFQKFSDSGVPYTTTNVKFRDVLPTLCSRNVRLCDLNMYQHQLEAI CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHH NKLMQGKNLVVNAETGGGKTEIWVSYALEMQLKGEFNVLAIYPTKALAGDQIERIVKYYI HHHHCCCCEEEEECCCCCCEEEEEEEEEEEEECCCEEEEEEECCHHCCHHHHHHHHHHHH EAGFSVSKQVKGKTKIVEVYYGDVIKYDGDVSNYIQSVKRAKTLLTNPEVVKNALFQNHK HCCCCHHHHCCCCEEEEEEEECCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC ISDFLKKVRLIVVDEFDFYGSSKSTVLLHIIKGIIDKFGIKPQIVIMSATLSDPEVVKPF HHHHHHHCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHCCE FDVEIIGGKSFRPANDTYIVLGKRDELNAISKALNVSFDDLVKNFFKYASDPKKEIYFLQ ECEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHEEEEE LFKDNAQLLPEYLDKLKGCDELTIIFSRSISEANNLVGKLGGKVNYDGTAPVAVHHSGID EECCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCHH KYVRQQVENDMRSGKLKVVVTVKTLLQGIDVGNVTRVVHVGIPDSVREFIQREGRKGRMA HHHHHHHHHHHHCCCEEEEEEHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHH SIKRTESVIFPLSLSDAVLLEDYSTSLKEWLSLGSESLILLPDNEFLKLIDVIRGILNDR HHCCCCCEEEEECCCCEEEEHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCH EFLKSVGITGTLPQISFYEQLHKTVPKLLFDGKNCNVVDKLNYRDVVEKHQLGCIDPMLN HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHCCCCHHHHHH AIVVRNSVINGKRHVIETSDFSSSIMCNNINISSHVVNNAIAYYEDICFSWKQHPDLNGD HHHHHHHHCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC IERGKVWSKVSLDVLFEGDGGFKQVHEIARKVFWYIESRRKIGQEYKVEKIELEYTPSPN CCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHCCEEEEEEEECCCCC LKYDFLTYVYASELEPDDVNKVDKGMYFILALLRLNYGIDLGLINFGVSNSGILKIWESE CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEECCC PTALLKRLREMKKVKVRGTELDCKKLLDDVRNAQPFRRLELVLKYLDPYTFNNFDFNEVK HHHHHHHHHHHHHHEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHH AIAERFVHYLCNTIPIQLQVISGTMIPKSPLIRSIIIDSFGGKYAVSSPTGEISIFDNEE HHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEECCCCCEEEEECCHH EAVKEAAKLNIEFTDAIVVPYGVSIGKKYKFQNEVVYIDKEINRLLGGPITPSKFRELVL HHHHHHHHCCEEEEEEEEEECCCCCCCCEEECCCEEEEEHHHHHHHCCCCCHHHHHHHHC NDDSLLKEENEADNSITRGEEVELTKIFRKRAETIRLMINLWKAYLTDK CCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MICDSSSILSSLDLVFQKFSDSGVPYTTTNVKFRDVLPTLCSRNVRLCDLNMYQHQLEAI CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHH NKLMQGKNLVVNAETGGGKTEIWVSYALEMQLKGEFNVLAIYPTKALAGDQIERIVKYYI HHHHCCCCEEEEECCCCCCEEEEEEEEEEEEECCCEEEEEEECCHHCCHHHHHHHHHHHH EAGFSVSKQVKGKTKIVEVYYGDVIKYDGDVSNYIQSVKRAKTLLTNPEVVKNALFQNHK HCCCCHHHHCCCCEEEEEEEECCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC ISDFLKKVRLIVVDEFDFYGSSKSTVLLHIIKGIIDKFGIKPQIVIMSATLSDPEVVKPF HHHHHHHCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHCCE FDVEIIGGKSFRPANDTYIVLGKRDELNAISKALNVSFDDLVKNFFKYASDPKKEIYFLQ ECEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHEEEEE LFKDNAQLLPEYLDKLKGCDELTIIFSRSISEANNLVGKLGGKVNYDGTAPVAVHHSGID EECCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCHH KYVRQQVENDMRSGKLKVVVTVKTLLQGIDVGNVTRVVHVGIPDSVREFIQREGRKGRMA HHHHHHHHHHHHCCCEEEEEEHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHH SIKRTESVIFPLSLSDAVLLEDYSTSLKEWLSLGSESLILLPDNEFLKLIDVIRGILNDR HHCCCCCEEEEECCCCEEEEHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCH EFLKSVGITGTLPQISFYEQLHKTVPKLLFDGKNCNVVDKLNYRDVVEKHQLGCIDPMLN HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHCCCCHHHHHH AIVVRNSVINGKRHVIETSDFSSSIMCNNINISSHVVNNAIAYYEDICFSWKQHPDLNGD HHHHHHHHCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC IERGKVWSKVSLDVLFEGDGGFKQVHEIARKVFWYIESRRKIGQEYKVEKIELEYTPSPN CCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHCCEEEEEEEECCCCC LKYDFLTYVYASELEPDDVNKVDKGMYFILALLRLNYGIDLGLINFGVSNSGILKIWESE CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEECCC PTALLKRLREMKKVKVRGTELDCKKLLDDVRNAQPFRRLELVLKYLDPYTFNNFDFNEVK HHHHHHHHHHHHHHEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHH AIAERFVHYLCNTIPIQLQVISGTMIPKSPLIRSIIIDSFGGKYAVSSPTGEISIFDNEE HHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEECCCCCEEEEECCHH EAVKEAAKLNIEFTDAIVVPYGVSIGKKYKFQNEVVYIDKEINRLLGGPITPSKFRELVL HHHHHHHHCCEEEEEEEEEECCCCCCCCEEECCCEEEEEHHHHHHHCCCCCHHHHHHHHC NDDSLLKEENEADNSITRGEEVELTKIFRKRAETIRLMINLWKAYLTDK CCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]