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The map label for this gene is rhmD [H]

Identifier: 159185392

GI number: 159185392

Start: 2814376

End: 2815578

Strand: Reverse

Name: rhmD [H]

Synonym: Atu2811

Alternate gene names: 159185392

Gene position: 2815578-2814376 (Counterclockwise)

Preceding gene: 159185393

Following gene: 15890056

Centisome position: 99.08

GC content: 58.1

Gene sequence:

>1203_bases
ATGAACCCCGACCCGGATTATTCGGCGGCTTACGTCATTCTGGATACGGATGAGCCGCGCCTGAAGGGCCATGGCCTGAC
CTTCACCATCGGCCGTGGCAATGACATTTGCTGCATGGCCATCGAAGCGATGCGCCATCTGGTCGTCGGCACCGATCTTG
CTACTGTCACTGAAAACCCCGGCAAATATTGGCGGCATCTAACCAGCGATAGCCAGCTGCGCTGGATCGGCCCGGATAAG
GGCGCGATGCATCTCGCTACCGGCGCAGTGGTCAACGCGGTGTGGGATTTGCTGGCCAAGAAGGCCGGCAAGCCGGTCTG
GCAGCTTGTTGCCGATATGAGCCCGGAAGAGATCGCCGATATCGTTGATTATCGGTACCTCACCGACGTGCTGACCCGCG
ATGATGCGCTGGCGATCCTCAGAAGGGCCGAAGCGGGCAAGAAGGAACGCATCGAGACACTGAAGAACGAGGGTTATGCC
TGCTATACGACGTCGGCCGGCTGGCTGGGTTACGACGATGCCAAGCTTCGCCGTCTCTGCCAGGAGGCAATCGATGCCGG
TTTCAACCATGTGAAGATGAAGGTCGGCCGCGATCTGGAGGACGACATCCGTCGTCTCACCATTACCCGTGAAGTGATTG
GCCCTGATCGTTACCTGATGATCGACGCCAACCAGGTATGGGAAGTGGATCAGGCGATCGAGTGGGTGAATAAGCTCGCC
TTTTCCAAGCCCTTCTTCATCGAAGAGCCGACCAGCCCGGATGATATCGCCGGCCATCGCAAGATTCGCGCCGCCATCGG
CTCGGTGAAGGTGGCAACCGGAGAAATGTGCCAGAACCGCATCATGTTCAAGCAGTTCATCGCCGAAGGCGCGATTGATG
TCGTGCAGATCGACAGCTGCCGCATGGGTGGCCTGAACGAGGTACTGGCGGTTCTGCTGATTGCTGCCAAATACAATCTG
CCGGTCTGGCCGCATGCGGGTGGTGTCGGCCTTTGCGAATATGTGCAGCACCTGTCGATGATCGACTATCTCGTGGTGTC
AGGCACCAAGGAAGGCCGCGTGATCGAATATGTCGACCATCTGCATGAGCACTTCATCGAGCCCTGCGATATCCGCAACG
CCGCTTATATGCCGCCGAAGCTGCCGGGCTTCTCCATCGAAATGAAGCCGGAGTCGATCGAGACTTACACTTTCGAGGAG
TGA

Upstream 100 bases:

>100_bases
TGACTCTGACCGCGAGTAACCGGCCATGACCAAAATTACAGATCTGCGTGTTTTCGACCTGCGTTTCCCGACCTCTCAAA
GCCTCGACGGTTCGGATGCG

Downstream 100 bases:

>100_bases
TCGAAAGATCGCAGCGCCTCTTCGACGCGCTGCCAATCCGCTTCGCTGCCGGGAAGGCCGAAACGCATGTCATCAGGCCT
TTCGTCAAAGATGCGCACCA

Product: hypothetical protein

Products: NA

Alternate protein names: RhamD [H]

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MNPDPDYSAAYVILDTDEPRLKGHGLTFTIGRGNDICCMAIEAMRHLVVGTDLATVTENPGKYWRHLTSDSQLRWIGPDK
GAMHLATGAVVNAVWDLLAKKAGKPVWQLVADMSPEEIADIVDYRYLTDVLTRDDALAILRRAEAGKKERIETLKNEGYA
CYTTSAGWLGYDDAKLRRLCQEAIDAGFNHVKMKVGRDLEDDIRRLTITREVIGPDRYLMIDANQVWEVDQAIEWVNKLA
FSKPFFIEEPTSPDDIAGHRKIRAAIGSVKVATGEMCQNRIMFKQFIAEGAIDVVQIDSCRMGGLNEVLAVLLIAAKYNL
PVWPHAGGVGLCEYVQHLSMIDYLVVSGTKEGRVIEYVDHLHEHFIEPCDIRNAAYMPPKLPGFSIEMKPESIETYTFEE

Sequences:

>Translated_400_residues
MNPDPDYSAAYVILDTDEPRLKGHGLTFTIGRGNDICCMAIEAMRHLVVGTDLATVTENPGKYWRHLTSDSQLRWIGPDK
GAMHLATGAVVNAVWDLLAKKAGKPVWQLVADMSPEEIADIVDYRYLTDVLTRDDALAILRRAEAGKKERIETLKNEGYA
CYTTSAGWLGYDDAKLRRLCQEAIDAGFNHVKMKVGRDLEDDIRRLTITREVIGPDRYLMIDANQVWEVDQAIEWVNKLA
FSKPFFIEEPTSPDDIAGHRKIRAAIGSVKVATGEMCQNRIMFKQFIAEGAIDVVQIDSCRMGGLNEVLAVLLIAAKYNL
PVWPHAGGVGLCEYVQHLSMIDYLVVSGTKEGRVIEYVDHLHEHFIEPCDIRNAAYMPPKLPGFSIEMKPESIETYTFEE
>Mature_400_residues
MNPDPDYSAAYVILDTDEPRLKGHGLTFTIGRGNDICCMAIEAMRHLVVGTDLATVTENPGKYWRHLTSDSQLRWIGPDK
GAMHLATGAVVNAVWDLLAKKAGKPVWQLVADMSPEEIADIVDYRYLTDVLTRDDALAILRRAEAGKKERIETLKNEGYA
CYTTSAGWLGYDDAKLRRLCQEAIDAGFNHVKMKVGRDLEDDIRRLTITREVIGPDRYLMIDANQVWEVDQAIEWVNKLA
FSKPFFIEEPTSPDDIAGHRKIRAAIGSVKVATGEMCQNRIMFKQFIAEGAIDVVQIDSCRMGGLNEVLAVLLIAAKYNL
PVWPHAGGVGLCEYVQHLSMIDYLVVSGTKEGRVIEYVDHLHEHFIEPCDIRNAAYMPPKLPGFSIEMKPESIETYTFEE

Specific function: Catalyzes the dehydration of L-rhamnonate to 2-keto-3- deoxy-L-rhamnonate (KDR) [H]

COG id: COG4948

COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family. RhamD subfamily [H]

Homologues:

Organism=Homo sapiens, GI42544119, Length=401, Percent_Identity=54.3640897755611, Blast_Score=466, Evalue=1e-131,
Organism=Homo sapiens, GI42544117, Length=399, Percent_Identity=53.6340852130326, Blast_Score=457, Evalue=1e-128,
Organism=Homo sapiens, GI186972148, Length=331, Percent_Identity=55.2870090634441, Blast_Score=396, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018110
- InterPro:   IPR013342
- InterPro:   IPR013341
- InterPro:   IPR001354 [H]

Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]

EC number: =4.2.1.90 [H]

Molecular weight: Translated: 44875; Mature: 44875

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS00909 MR_MLE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPDPDYSAAYVILDTDEPRLKGHGLTFTIGRGNDICCMAIEAMRHLVVGTDLATVTENP
CCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCHHEECCCC
GKYWRHLTSDSQLRWIGPDKGAMHLATGAVVNAVWDLLAKKAGKPVWQLVADMSPEEIAD
HHHHHHCCCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHH
IVDYRYLTDVLTRDDALAILRRAEAGKKERIETLKNEGYACYTTSAGWLGYDDAKLRRLC
HHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH
QEAIDAGFNHVKMKVGRDLEDDIRRLTITREVIGPDRYLMIDANQVWEVDQAIEWVNKLA
HHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHH
FSKPFFIEEPTSPDDIAGHRKIRAAIGSVKVATGEMCQNRIMFKQFIAEGAIDVVQIDSC
CCCCCEEECCCCCCHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHCCCEEEEEECCC
RMGGLNEVLAVLLIAAKYNLPVWPHAGGVGLCEYVQHLSMIDYLVVSGTKEGRVIEYVDH
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LHEHFIEPCDIRNAAYMPPKLPGFSIEMKPESIETYTFEE
HHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEECCC
>Mature Secondary Structure
MNPDPDYSAAYVILDTDEPRLKGHGLTFTIGRGNDICCMAIEAMRHLVVGTDLATVTENP
CCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCHHEECCCC
GKYWRHLTSDSQLRWIGPDKGAMHLATGAVVNAVWDLLAKKAGKPVWQLVADMSPEEIAD
HHHHHHCCCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHH
IVDYRYLTDVLTRDDALAILRRAEAGKKERIETLKNEGYACYTTSAGWLGYDDAKLRRLC
HHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH
QEAIDAGFNHVKMKVGRDLEDDIRRLTITREVIGPDRYLMIDANQVWEVDQAIEWVNKLA
HHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHH
FSKPFFIEEPTSPDDIAGHRKIRAAIGSVKVATGEMCQNRIMFKQFIAEGAIDVVQIDSC
CCCCCEEECCCCCCHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHCCCEEEEEECCC
RMGGLNEVLAVLLIAAKYNLPVWPHAGGVGLCEYVQHLSMIDYLVVSGTKEGRVIEYVDH
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LHEHFIEPCDIRNAAYMPPKLPGFSIEMKPESIETYTFEE
HHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA