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The map label for this gene is ligT

Identifier: 159185324

GI number: 159185324

Start: 2660738

End: 2661331

Strand: Reverse

Name: ligT

Synonym: Atu2678

Alternate gene names: NA

Gene position: 2661331-2660738 (Counterclockwise)

Preceding gene: 159185325

Following gene: 159185322

Centisome position: 93.66

GC content: 59.93

Gene sequence:

>594_bases
ATGCCGAGACTGTTTACCGCCCTCGAAATTCCGCGCAATGCGGCGATGAGCCTCTCATTGTTGCGCGGTGGTCTGCCGGG
AGCCCGGTGGATCGATGTGGAGAATTATCACATAACCCTGCGGTTTATCGGTGACATCGACGGACGGACCGCCGATGAAG
TCGTGGACAGGCTGGATCGGATCGAAAGACCGGAGTTCCAGCTCAATCTCACCGGCATTGGTTCCTTCGGCTCCAAGAAA
CCGCATTCCATCTGGGCGGGGGTTTCTCCCTCACCGGAAATGCATGCGCTGCAGGCGGAAGTCGAGCGAATTTGTCAGAG
GATCGGCCTCCCACCCGATCCGCGCAAGTTCATGCCACATGTCACGCTGGCGCGGCTGCGCTCCTCGCGTGTGGATGATG
TGGTGCATTATCTTTCCGGACGCGGCAACTTCCGCACCTCGCCCTTCACGGTCGGCCGTTTCGTGCTGATGTCGTCGAAG
GAATCGGTGGGCGGCGGGCCGTATGTCGTCGAGGAGGCTTTCCCGCTTCACGAGGCGCGGTCCAGCTCCATCTTTTCGAG
CAACGATCTGCATCCCGCCAAGAGCATGTTGTAG

Upstream 100 bases:

>100_bases
TCATCAAGACAATCGGTGCGCAAAAAAAATAAGCACTTGCGCCCATCTGCATTGCATGATTCGCTATGCTTGTTCTGCCA
AAAGATTCGGGGAGCTCGCC

Downstream 100 bases:

>100_bases
ACATCAAGGAACCCGTCCTCGGCCCCGTAATAGGGATCGGGGACGTTCTCCGGGTGGCCTGCGGCATAATCCATGAAGAG
ATGGATTTTGTGCCGGTATT

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDIDGRTADEVVDRLDRIERPEFQLNLTGIGSFGSKK
PHSIWAGVSPSPEMHALQAEVERICQRIGLPPDPRKFMPHVTLARLRSSRVDDVVHYLSGRGNFRTSPFTVGRFVLMSSK
ESVGGGPYVVEEAFPLHEARSSSIFSSNDLHPAKSML

Sequences:

>Translated_197_residues
MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDIDGRTADEVVDRLDRIERPEFQLNLTGIGSFGSKK
PHSIWAGVSPSPEMHALQAEVERICQRIGLPPDPRKFMPHVTLARLRSSRVDDVVHYLSGRGNFRTSPFTVGRFVLMSSK
ESVGGGPYVVEEAFPLHEARSSSIFSSNDLHPAKSML
>Mature_196_residues
PRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDIDGRTADEVVDRLDRIERPEFQLNLTGIGSFGSKKP
HSIWAGVSPSPEMHALQAEVERICQRIGLPPDPRKFMPHVTLARLRSSRVDDVVHYLSGRGNFRTSPFTVGRFVLMSSKE
SVGGGPYVVEEAFPLHEARSSSIFSSNDLHPAKSML

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 21920; Mature: 21789

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDIDGRTADEVVDRLDR
CCCCHHHHHCCCCHHHHHHHHHCCCCCCEEEEECCEEEEEEEEECCCCCCHHHHHHHHHH
IERPEFQLNLTGIGSFGSKKPHSIWAGVSPSPEMHALQAEVERICQRIGLPPDPRKFMPH
CCCCCEEEEEEEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCH
VTLARLRSSRVDDVVHYLSGRGNFRTSPFTVGRFVLMSSKESVGGGPYVVEEAFPLHEAR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHEEEEEEECCCCCCCCCEEECCCCCCHHHH
SSSIFSSNDLHPAKSML
CCCCCCCCCCCHHHHCC
>Mature Secondary Structure 
PRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDIDGRTADEVVDRLDR
CCCHHHHHCCCCHHHHHHHHHCCCCCCEEEEECCEEEEEEEEECCCCCCHHHHHHHHHH
IERPEFQLNLTGIGSFGSKKPHSIWAGVSPSPEMHALQAEVERICQRIGLPPDPRKFMPH
CCCCCEEEEEEEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCH
VTLARLRSSRVDDVVHYLSGRGNFRTSPFTVGRFVLMSSKESVGGGPYVVEEAFPLHEAR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHEEEEEEECCCCCCCCCEEECCCCCCHHHH
SSSIFSSNDLHPAKSML
CCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]