Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159185312
Identifier: 159185312
GI number: 159185312
Start: 2643260
End: 2643811
Strand: Direct
Name: 159185312
Synonym: Atu2660
Alternate gene names: NA
Gene position: 2643260-2643811 (Clockwise)
Preceding gene: 15889913
Following gene: 15889921
Centisome position: 93.02
GC content: 56.34
Gene sequence:
>552_bases ATGGGTGCTGATCGCCAGTGCTATTTTTTCCTGGCTTTACGCCTTCAACGTCATCAATTCCCGCAACCAGTTCGTGAACG CCATCGGGAGTTTCCTGGTGAATGTCACGGAACCGGCCCTGCGCCCCATCCGCCGCATTCTGCCCAATCTCGGCGGTATC GACATCTCGCCGATCATCCTGCTCCTGATCATCTTCTTCATCCGCTCCTTCATGTGGAACACGCTTTACCCGATGACTGT TTGAGCGGCCTCTGGCGAAAACACGATGATCATGTCCGCCTGTCCGTTCGCCTGACCCCGAACGGCGGGCGTGATGCGAT TGACGGCGTGGAGCAGGATGCGGATGGAAACGCGCATCTGAAAGCCCGTGTCAGCGCCGTGCCGGAAGGCGGCAAGGCGA ACAAGGCCCTCATTGTTTTGCTGGCAAAAAAACTCGGCCTGCCCAAGTCTTCCATTACCTTCATCTCAGGCGAAACAGCG CGCAAAAAAATCCTCCGGATCGATACCGACCCGGAGGATTTCGAAAAGCTCTTTAAAAAGCTGGCGGGCTAG
Upstream 100 bases:
>100_bases CCGGTTCACGCGTCAATGTCTAAATGTCTTGCAACCAAGATACGGAGATATTGATGCTTGCCCTGTTTCAGACCATCGAT CTGGCCTTGAACCTCTACAC
Downstream 100 bases:
>100_bases GGCTATCAGCCCTGCGTCTTGTAACGCTCGATGGCTTCGACGATCAGCTTCTTGGCGACGTCGACATCCTGCCAGCCGCC CATCTTCACCCACTTGCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 183; Mature: 182
Protein sequence:
>183_residues MGADRQCYFFLALRLQRHQFPQPVRERHREFPGECHGTGPAPHPPHSAQSRRYRHLADHPAPDHLLHPLLHVEHALPDDC LSGLWRKHDDHVRLSVRLTPNGGRDAIDGVEQDADGNAHLKARVSAVPEGGKANKALIVLLAKKLGLPKSSITFISGETA RKKILRIDTDPEDFEKLFKKLAG
Sequences:
>Translated_183_residues MGADRQCYFFLALRLQRHQFPQPVRERHREFPGECHGTGPAPHPPHSAQSRRYRHLADHPAPDHLLHPLLHVEHALPDDC LSGLWRKHDDHVRLSVRLTPNGGRDAIDGVEQDADGNAHLKARVSAVPEGGKANKALIVLLAKKLGLPKSSITFISGETA RKKILRIDTDPEDFEKLFKKLAG >Mature_182_residues GADRQCYFFLALRLQRHQFPQPVRERHREFPGECHGTGPAPHPPHSAQSRRYRHLADHPAPDHLLHPLLHVEHALPDDCL SGLWRKHDDHVRLSVRLTPNGGRDAIDGVEQDADGNAHLKARVSAVPEGGKANKALIVLLAKKLGLPKSSITFISGETAR KKILRIDTDPEDFEKLFKKLAG
Specific function: Unknown
COG id: COG1872
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0235 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003746 [H]
Pfam domain/function: PF02594 DUF167 [H]
EC number: NA
Molecular weight: Translated: 20471; Mature: 20339
Theoretical pI: Translated: 9.63; Mature: 9.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGADRQCYFFLALRLQRHQFPQPVRERHREFPGECHGTGPAPHPPHSAQSRRYRHLADHP CCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC APDHLLHPLLHVEHALPDDCLSGLWRKHDDHVRLSVRLTPNGGRDAIDGVEQDADGNAHL CHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCCCCCHHHCCCCCCCCCCCEE KARVSAVPEGGKANKALIVLLAKKLGLPKSSITFISGETARKKILRIDTDPEDFEKLFKK EEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHEEECCCCHHHHHHHHHH LAG HCC >Mature Secondary Structure GADRQCYFFLALRLQRHQFPQPVRERHREFPGECHGTGPAPHPPHSAQSRRYRHLADHP CCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC APDHLLHPLLHVEHALPDDCLSGLWRKHDDHVRLSVRLTPNGGRDAIDGVEQDADGNAHL CHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCCCCCHHHCCCCCCCCCCCEE KARVSAVPEGGKANKALIVLLAKKLGLPKSSITFISGETARKKILRIDTDPEDFEKLFKK EEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHEEECCCCHHHHHHHHHH LAG HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11743193; 11743194 [H]