Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yclN [H]
Identifier: 159185231
GI number: 159185231
Start: 2442536
End: 2443564
Strand: Direct
Name: yclN [H]
Synonym: Atu2474
Alternate gene names: 159185231
Gene position: 2442536-2443564 (Clockwise)
Preceding gene: 159185230
Following gene: 15889744
Centisome position: 85.96
GC content: 62.88
Gene sequence:
>1029_bases CTGGCCCCCCTCAATACCCTGCGAGGTCGCCTGAACGTCTACCAATTTCGAAACATCACCAACGTGAAATCCCTGCCCCT CATATCAGCTCTTCTTCTGGCTCTGGCGCTCGCCATCACCAGCCTGTTCGTCGGCGTCAGCAATGTGTCGCTCGCCACGC TTTTTGCGCAGGACACCAGCGCCGACGCCCTGCGCGTGCTGGTGGTCAGCCGCATTCCCCGCACACTGGCGCTGATCCTC GCCGGCAGCTCGATGGCGATTGCCGGTCTCATCATGCAGATGTTGGTGCGCAACCGTTTCGTGGAACCGTCAACGGCAGG CACCACCGAATCCGCCGGCCTTGGCCTTCTGGTCGTCACCCTGCTTGCGCCCGAAACGCCCATCTTCGGCAAGATGCTGG TGGCCGCGGCCTTCGCGCTGGCAGGCACCGCGCTGTTCCTGCGTATTCTGAGACAGGTGCCGCTGCGCGACGTGCTGCTG GTGCCGCTGATCGGCATCATGCTGGGCGGCGTCATTGCCGCCATCACCACCTTCTTCGCCTATCGTTTCGACCTGCTGCA ATCACTCGGCGCCTGGATGACCGGGGATTTTTCCGGCGTGCTGCGCGGCCGTTATGAGTTGCTGTGGGTCGGTTTCCTCT TCGCCATCGCCGCCTATCTCGCCGCAGACCGCTTCACCGTGGCCGGCATGGGAGGCGATTTCACCACCAATCTCGGCCTC AACTATCGCCGGGTCATGGCGCTTGGCCTCACCATCGTTTCGCTGGTCAGCGCGGTGGTGGTGGTCACGGTCGGCATGAT CCCCTTTCTCGGCCTGATCGTGCCGAATGTCGTCAGCCTGATGATCGGCGACAATATGCGCCGCTCGGTGCCCTGGGTGG CAACGCTCGGCGCGGTCTTCGTGCTTTCCTGCGATATCATCGGCCGGACCGTGCGCGCACCTTACGAAATCCCTATCGGA ACCGTGGTCGGCGTCATCGGCAGCGCGCTGTTCCTCTATCTCTTGCTGCGGAAACGTCACCATGCATGA
Upstream 100 bases:
>100_bases CCGCGTCATCCTCGGCCCTGTGCCGAAGATCTAATCACATCGAATTAAATCAATCGGTTGCAGATCCTCGGGCCAAGCCC GAGGATGACGGAGGAGAGGT
Downstream 100 bases:
>100_bases GAGACATCCCGACCGGCGCGCGAAAACCGTTCTCATCATCCTTGCGGCAGTCTCCCTCATCTGCATGGCCGCCTTCATGA CGCTCGGTGCAAAGGGCAGC
Product: ABC transporter, membrane spanning protein
Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MAPLNTLRGRLNVYQFRNITNVKSLPLISALLLALALAITSLFVGVSNVSLATLFAQDTSADALRVLVVSRIPRTLALIL AGSSMAIAGLIMQMLVRNRFVEPSTAGTTESAGLGLLVVTLLAPETPIFGKMLVAAAFALAGTALFLRILRQVPLRDVLL VPLIGIMLGGVIAAITTFFAYRFDLLQSLGAWMTGDFSGVLRGRYELLWVGFLFAIAAYLAADRFTVAGMGGDFTTNLGL NYRRVMALGLTIVSLVSAVVVVTVGMIPFLGLIVPNVVSLMIGDNMRRSVPWVATLGAVFVLSCDIIGRTVRAPYEIPIG TVVGVIGSALFLYLLLRKRHHA
Sequences:
>Translated_342_residues MAPLNTLRGRLNVYQFRNITNVKSLPLISALLLALALAITSLFVGVSNVSLATLFAQDTSADALRVLVVSRIPRTLALIL AGSSMAIAGLIMQMLVRNRFVEPSTAGTTESAGLGLLVVTLLAPETPIFGKMLVAAAFALAGTALFLRILRQVPLRDVLL VPLIGIMLGGVIAAITTFFAYRFDLLQSLGAWMTGDFSGVLRGRYELLWVGFLFAIAAYLAADRFTVAGMGGDFTTNLGL NYRRVMALGLTIVSLVSAVVVVTVGMIPFLGLIVPNVVSLMIGDNMRRSVPWVATLGAVFVLSCDIIGRTVRAPYEIPIG TVVGVIGSALFLYLLLRKRHHA >Mature_341_residues APLNTLRGRLNVYQFRNITNVKSLPLISALLLALALAITSLFVGVSNVSLATLFAQDTSADALRVLVVSRIPRTLALILA GSSMAIAGLIMQMLVRNRFVEPSTAGTTESAGLGLLVVTLLAPETPIFGKMLVAAAFALAGTALFLRILRQVPLRDVLLV PLIGIMLGGVIAAITTFFAYRFDLLQSLGAWMTGDFSGVLRGRYELLWVGFLFAIAAYLAADRFTVAGMGGDFTTNLGLN YRRVMALGLTIVSLVSAVVVVTVGMIPFLGLIVPNVVSLMIGDNMRRSVPWVATLGAVFVLSCDIIGRTVRAPYEIPIGT VVGVIGSALFLYLLLRKRHHA
Specific function: Probably part of an ABC transporter complex [H]
COG id: COG4606
COG function: function code P; ABC-type enterochelin transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790740, Length=314, Percent_Identity=27.7070063694268, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1788004, Length=275, Percent_Identity=33.0909090909091, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1790741, Length=279, Percent_Identity=29.0322580645161, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1786347, Length=295, Percent_Identity=26.1016949152542, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786805, Length=311, Percent_Identity=27.9742765273312, Blast_Score=61, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000522 [H]
Pfam domain/function: PF01032 FecCD [H]
EC number: NA
Molecular weight: Translated: 36519; Mature: 36387
Theoretical pI: Translated: 11.26; Mature: 11.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPLNTLRGRLNVYQFRNITNVKSLPLISALLLALALAITSLFVGVSNVSLATLFAQDTS CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEECCCC ADALRVLVVSRIPRTLALILAGSSMAIAGLIMQMLVRNRFVEPSTAGTTESAGLGLLVVT HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH LLAPETPIFGKMLVAAAFALAGTALFLRILRQVPLRDVLLVPLIGIMLGGVIAAITTFFA HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH YRFDLLQSLGAWMTGDFSGVLRGRYELLWVGFLFAIAAYLAADRFTVAGMGGDFTTNLGL HHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEECCCC NYRRVMALGLTIVSLVSAVVVVTVGMIPFLGLIVPNVVSLMIGDNMRRSVPWVATLGAVF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHH VLSCDIIGRTVRAPYEIPIGTVVGVIGSALFLYLLLRKRHHA HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure APLNTLRGRLNVYQFRNITNVKSLPLISALLLALALAITSLFVGVSNVSLATLFAQDTS CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEECCCC ADALRVLVVSRIPRTLALILAGSSMAIAGLIMQMLVRNRFVEPSTAGTTESAGLGLLVVT HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH LLAPETPIFGKMLVAAAFALAGTALFLRILRQVPLRDVLLVPLIGIMLGGVIAAITTFFA HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH YRFDLLQSLGAWMTGDFSGVLRGRYELLWVGFLFAIAAYLAADRFTVAGMGGDFTTNLGL HHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEECCCC NYRRVMALGLTIVSLVSAVVVVTVGMIPFLGLIVPNVVSLMIGDNMRRSVPWVATLGAVF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHH VLSCDIIGRTVRAPYEIPIGTVVGVIGSALFLYLLLRKRHHA HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]
Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8969502; 9384377 [H]