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The map label for this gene is yjfH [C]

Identifier: 159185217

GI number: 159185217

Start: 2411598

End: 2412296

Strand: Reverse

Name: yjfH [C]

Synonym: Atu2441

Alternate gene names: 159185217

Gene position: 2412296-2411598 (Counterclockwise)

Preceding gene: 15889713

Following gene: 15889709

Centisome position: 84.89

GC content: 63.38

Gene sequence:

>699_bases
ATGCTGGCCGCCGCCCATAAAGCCGGTGGTACCTTTGCGGCGGAAAGCATTCTCATTCTGCGCAACCGGCTTTCCGGCGT
GGCGGATATTCTTGCCGATTTTCCTGATGACGTTCCCGTTTATGTGGCCGAAGCGCCGGTGCTGGACGGTATCGTCGGTT
TCCACCTGCATCGCGGCATTCTGGCGCTCGGGCGACGGGTGCGCGATGACGGGCTGGAGCAGATGACCGCGGCACTTCCC
GCGTCTTCGCTGGTGCTGGTGGGCTGCGGCATTTCCAACCACGATAATCTCGGTGCGATGTTCCGCAATGCGGCGGCGTT
TTATGCCGATGCGGTGCTGCTGGACGAGACGTGCTGCGATCCGCTCTATCGCAAGGCGCTCAGGGTTTCCGTCGGCTCGG
TGCTGTCGGTGCCCTATCATCGCGGCGGTGGAGCGGTGGAGATGCTGGAGCGGCTTTCCGAGGAGGGATTTGCGATCTGG
GGCCTGTCGCCGGATGGCAAGACGGAAATCCGCGACATTCCCCGCTCCGAGCGGATGGCGCTGGTGATTGGCACGGAAGG
CGAGGGGTTGCCGCAATCGGTGCTGTCGCGTTTTCAGACGGCGCGGATTGCGCAGTCGCCGCAGGTTGATAGCTTGAATG
CGGGGACGGCTTCGGGGCTTGCGCTTTATCAGATGGCGGGGGTGATGGGGCGGGTGTGA

Upstream 100 bases:

>100_bases
CCCGGCCGATCCGCGCATCGCCGCCTTTCGCGATATTCGTGAGCGTGATCTCACCGGTCGGCAGGGGCGCTTCATTGCCG
AAGGCACGGTGGTGCTGCGC

Downstream 100 bases:

>100_bases
TCGGGTGGCATCGATGTGCGCCAAGGAGGCTTACAGTTAACTCTGTGTATGCCGCTTCACCCCCCTCTGCCCTGCCGGGC
ATCTCCCCCACAAGGAGGGA

Product: RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MLAAAHKAGGTFAAESILILRNRLSGVADILADFPDDVPVYVAEAPVLDGIVGFHLHRGILALGRRVRDDGLEQMTAALP
ASSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLSEEGFAIW
GLSPDGKTEIRDIPRSERMALVIGTEGEGLPQSVLSRFQTARIAQSPQVDSLNAGTASGLALYQMAGVMGRV

Sequences:

>Translated_232_residues
MLAAAHKAGGTFAAESILILRNRLSGVADILADFPDDVPVYVAEAPVLDGIVGFHLHRGILALGRRVRDDGLEQMTAALP
ASSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLSEEGFAIW
GLSPDGKTEIRDIPRSERMALVIGTEGEGLPQSVLSRFQTARIAQSPQVDSLNAGTASGLALYQMAGVMGRV
>Mature_232_residues
MLAAAHKAGGTFAAESILILRNRLSGVADILADFPDDVPVYVAEAPVLDGIVGFHLHRGILALGRRVRDDGLEQMTAALP
ASSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSVGSVLSVPYHRGGGAVEMLERLSEEGFAIW
GLSPDGKTEIRDIPRSERMALVIGTEGEGLPQSVLSRFQTARIAQSPQVDSLNAGTASGLALYQMAGVMGRV

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1790623, Length=193, Percent_Identity=29.0155440414508, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 24530; Mature: 24530

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAAAHKAGGTFAAESILILRNRLSGVADILADFPDDVPVYVAEAPVLDGIVGFHLHRGI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHH
LALGRRVRDDGLEQMTAALPASSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCD
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PLYRKALRVSVGSVLSVPYHRGGGAVEMLERLSEEGFAIWGLSPDGKTEIRDIPRSERMA
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCHHHHHCCCCCCEE
LVIGTEGEGLPQSVLSRFQTARIAQSPQVDSLNAGTASGLALYQMAGVMGRV
EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLAAAHKAGGTFAAESILILRNRLSGVADILADFPDDVPVYVAEAPVLDGIVGFHLHRGI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHH
LALGRRVRDDGLEQMTAALPASSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCD
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PLYRKALRVSVGSVLSVPYHRGGGAVEMLERLSEEGFAIWGLSPDGKTEIRDIPRSERMA
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCHHHHHCCCCCCEE
LVIGTEGEGLPQSVLSRFQTARIAQSPQVDSLNAGTASGLALYQMAGVMGRV
EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]