Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159185197
Identifier: 159185197
GI number: 159185197
Start: 2372336
End: 2373001
Strand: Reverse
Name: 159185197
Synonym: Atu2400
Alternate gene names: NA
Gene position: 2373001-2372336 (Counterclockwise)
Preceding gene: 15889672
Following gene: 159185196
Centisome position: 83.51
GC content: 60.96
Gene sequence:
>666_bases TTGAGAACTGTCCTCAGATGGATCGGCAGCGGCTTGCTGCTGGTGGTCCTGCTTCTCGTGCTCGGCACCGTGGTGCCGCG CCCTTTTTTCGCCGATGAGGCAAATGACGCGAAGGATCGCGAAATCCTGCTGTTGTCGAACCCGATCCATACGGACATCG CCCTGCCTGTCGATGACGATCTGCGGCGGGTCTTTGCCGAATTGCAGGAGGGCGGCATTGCGGTCAATCATCCGGCGGCG GCCACTCTGGTGTTCGGCTGGGGCGGCCGGTCGTTTTACATCCAGACGCCCACCTGGGCCGATCTGAAACCGATGCCGGT ATTGCGCTCGTTCACGCTCGACAGTTCCGTCATGCATGTGGATGTGACCGGGGATTTTCCCGCCGATCTGGCCGGGGTAA AACGCCTTCGCATTTCCGAAGCGGGGTATCAGCGCCTTATCGCGGGCATCAGTGCAAGTTTTGTCAGGCAGGACGGCAGG GTTCAGCTGGTTCCCGGTGTCGCCTACGGTCTGACCGATGCGTTTTTCGAGGCGAATGGCTGGTTCAATGCGCTGGCCGG CTGCAACACCTGGTCAGCTGCCATGTTGCGGCAGGCTGGTATCCGAACGGGCTGGTGGACACCCTTGCCACCGCTGTTGC GCTGGTCGGTAGACCTGCACAATTGA
Upstream 100 bases:
>100_bases AGACTTATGAGGTGCGCGCGGATGGCGAGTTGCTGACCTGCGAACCGGCGACTGTGCTGCCGATGGCGCAGCGTTATTTC CTGTTTTAACGGACGTCGCG
Downstream 100 bases:
>100_bases TCCCCAATTCCGTGCGGCCATTTCGCGTATTTGGCGGCTGAAATCCTTTTTTTATGCTGCACTGCAATGCATCTTGCGCT ATGGAAACGATAAAAGAATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 221; Mature: 221
Protein sequence:
>221_residues MRTVLRWIGSGLLLVVLLLVLGTVVPRPFFADEANDAKDREILLLSNPIHTDIALPVDDDLRRVFAELQEGGIAVNHPAA ATLVFGWGGRSFYIQTPTWADLKPMPVLRSFTLDSSVMHVDVTGDFPADLAGVKRLRISEAGYQRLIAGISASFVRQDGR VQLVPGVAYGLTDAFFEANGWFNALAGCNTWSAAMLRQAGIRTGWWTPLPPLLRWSVDLHN
Sequences:
>Translated_221_residues MRTVLRWIGSGLLLVVLLLVLGTVVPRPFFADEANDAKDREILLLSNPIHTDIALPVDDDLRRVFAELQEGGIAVNHPAA ATLVFGWGGRSFYIQTPTWADLKPMPVLRSFTLDSSVMHVDVTGDFPADLAGVKRLRISEAGYQRLIAGISASFVRQDGR VQLVPGVAYGLTDAFFEANGWFNALAGCNTWSAAMLRQAGIRTGWWTPLPPLLRWSVDLHN >Mature_221_residues MRTVLRWIGSGLLLVVLLLVLGTVVPRPFFADEANDAKDREILLLSNPIHTDIALPVDDDLRRVFAELQEGGIAVNHPAA ATLVFGWGGRSFYIQTPTWADLKPMPVLRSFTLDSSVMHVDVTGDFPADLAGVKRLRISEAGYQRLIAGISASFVRQDGR VQLVPGVAYGLTDAFFEANGWFNALAGCNTWSAAMLRQAGIRTGWWTPLPPLLRWSVDLHN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24293; Mature: 24293
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTVLRWIGSGLLLVVLLLVLGTVVPRPFFADEANDAKDREILLLSNPIHTDIALPVDDD CHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCHH LRRVFAELQEGGIAVNHPAAATLVFGWGGRSFYIQTPTWADLKPMPVLRSFTLDSSVMHV HHHHHHHHHHCCEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCHHHHCCCCCCEEEE DVTGDFPADLAGVKRLRISEAGYQRLIAGISASFVRQDGRVQLVPGVAYGLTDAFFEANG EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCC WFNALAGCNTWSAAMLRQAGIRTGWWTPLPPLLRWSVDLHN CHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHEEEEECCC >Mature Secondary Structure MRTVLRWIGSGLLLVVLLLVLGTVVPRPFFADEANDAKDREILLLSNPIHTDIALPVDDD CHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCHH LRRVFAELQEGGIAVNHPAAATLVFGWGGRSFYIQTPTWADLKPMPVLRSFTLDSSVMHV HHHHHHHHHHCCEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCHHHHCCCCCCEEEE DVTGDFPADLAGVKRLRISEAGYQRLIAGISASFVRQDGRVQLVPGVAYGLTDAFFEANG EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCC WFNALAGCNTWSAAMLRQAGIRTGWWTPLPPLLRWSVDLHN CHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA