| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
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The map label for this gene is noeK [H]
Identifier: 159185184
GI number: 159185184
Start: 2351208
End: 2352623
Strand: Direct
Name: noeK [H]
Synonym: Atu2379
Alternate gene names: 159185184
Gene position: 2351208-2352623 (Clockwise)
Preceding gene: 159185183
Following gene: 159185185
Centisome position: 82.74
GC content: 63.28
Gene sequence:
>1416_bases ATGAGCCTGAAATTCGGAACGAGCGGCCTTCGCGGCCTCTCCGTCGATCTGAAGGGAAAAGCCTCCGCCGTCTACGCCAC GGCATTTGCAAGGCACCTTCTCACATCGGGTCAGGCAAAGGTGGGTGATCCCATTCTCGTCGGCCGCGATTTTCGCGACT CGAGCCCGGATGTCTCCGCCACCTGCATCGCCGCGCTGAAAAAAGCCGGCCTCAATCCGCTCGATTGCGGCACGGTGCCG ACCCCGGCACTGGCACTTTACGGCCTGTCGCTGAAGGCGGGCGCGCTGATGATTACCGGCTCGCATATCCCGGCAGACCG CAACGGCATCAAATTCTACCGCCCGGACGGCGAAATCGACAAGCAGGACGAAACCGCGATCGCGGCCCTTGCAGCCGAAA TCGAGGCGGAAGGCATAAGCGACGAGGCGGCCACCGCCGAGGACCATTCCGCCATCGCTGCCGAACTTTTCTACGAACGC AACATCGCCCTCCTGCCGGAAAAGGCGCTTTCCGGCCTCAGGATCGGCGTTTACCAGCACAGCACGGTAGCACGCGATCT CTTTGTCGACGTGCTGGCCCATTATGGCGCCGACGTCGTGCCACTCGGCCGCTCCGATAGCTTTATCCCGGTGGATACCG AGGCAGTCTCGCCCGAAACGCTGGCACTTCTCAGAAAATGGTCGCCCGAGCATAGCCTCGATGCCATCGTTTCCGCCGAT GGCGATGGCGACCGTCCTTTGCTGACCGATGAAAACGGCGTGCCGCTGCGCGGCGACCTGATCGGCCTCATCACCGCCAA TTTCCTCGATGCCGGCGTCGTCGTCACCCCGGTCACGTCCAATTCGGGTATCGAGGCGAGCGGCTCCTTCGAAGTCATCC GCACCAAAGTCGGCTCACCCTTTGTGATCGCCGGCATGGCGCAGGCTCTCGCCGAGGGAAAAAACGGCGTCATGGGTTTC GAGGCCAATGGCGGCCTGCTGACGGCCTCCGCCTTTACGCTCAACGGCAGGCCGCTCTCGCCGCTGCCGACACGTGACAG CTTCCTGCCCATCCTTGCCGTGCTGCTTCTCTCGGCTGAACAGAAAAAACCGCTGTCGGAGATCGCCGCCGCCTACAGGC TGCCGGTCGCCGCCGCCGACCGCCTGGAAAACTTCGCCCAGGAAAAAAGCGCCGCCCTGATGACGCATCTGCGCGCCTCC CGCGACAACCTCGACGCCTTCCTCGCCCCCGTTGGCGCGGTGAAGGATTTGAGCGACATTGACGGCCTGCGTGTGGCGCT CACCGATGGCAGCACCATCCATTTCCGCCCTTCCGGCAACGCCCCGGAAATGCGCTGCTACGTCGAGGCCGCCAACCAGG ACGAAGCCGAAACGCTGTTGCACAAGGGGCTCGAGCTCATCCGGAATTTTGGCTGA
Upstream 100 bases:
>100_bases AGCGATGATTGACTTGAATGGATCGATACGGTTCTTTCAACCGTTATATTTTTTCATTATCCCTTTGCCCCTCAAAGATT TTATGGAAACGGAGTTTGGA
Downstream 100 bases:
>100_bases GTGTAGATGCCGCCTGCGCGTCATTCCGGTGTGAAACAGGAATGACGCGCTTCAGCAGTCGGGACCGATGTCCCAAATGT CGCATCCCGCCTTTCCCTGT
Product: phosphomannomutase
Products: NA
Alternate protein names: PMM [H]
Number of amino acids: Translated: 471; Mature: 470
Protein sequence:
>471_residues MSLKFGTSGLRGLSVDLKGKASAVYATAFARHLLTSGQAKVGDPILVGRDFRDSSPDVSATCIAALKKAGLNPLDCGTVP TPALALYGLSLKAGALMITGSHIPADRNGIKFYRPDGEIDKQDETAIAALAAEIEAEGISDEAATAEDHSAIAAELFYER NIALLPEKALSGLRIGVYQHSTVARDLFVDVLAHYGADVVPLGRSDSFIPVDTEAVSPETLALLRKWSPEHSLDAIVSAD GDGDRPLLTDENGVPLRGDLIGLITANFLDAGVVVTPVTSNSGIEASGSFEVIRTKVGSPFVIAGMAQALAEGKNGVMGF EANGGLLTASAFTLNGRPLSPLPTRDSFLPILAVLLLSAEQKKPLSEIAAAYRLPVAAADRLENFAQEKSAALMTHLRAS RDNLDAFLAPVGAVKDLSDIDGLRVALTDGSTIHFRPSGNAPEMRCYVEAANQDEAETLLHKGLELIRNFG
Sequences:
>Translated_471_residues MSLKFGTSGLRGLSVDLKGKASAVYATAFARHLLTSGQAKVGDPILVGRDFRDSSPDVSATCIAALKKAGLNPLDCGTVP TPALALYGLSLKAGALMITGSHIPADRNGIKFYRPDGEIDKQDETAIAALAAEIEAEGISDEAATAEDHSAIAAELFYER NIALLPEKALSGLRIGVYQHSTVARDLFVDVLAHYGADVVPLGRSDSFIPVDTEAVSPETLALLRKWSPEHSLDAIVSAD GDGDRPLLTDENGVPLRGDLIGLITANFLDAGVVVTPVTSNSGIEASGSFEVIRTKVGSPFVIAGMAQALAEGKNGVMGF EANGGLLTASAFTLNGRPLSPLPTRDSFLPILAVLLLSAEQKKPLSEIAAAYRLPVAAADRLENFAQEKSAALMTHLRAS RDNLDAFLAPVGAVKDLSDIDGLRVALTDGSTIHFRPSGNAPEMRCYVEAANQDEAETLLHKGLELIRNFG >Mature_470_residues SLKFGTSGLRGLSVDLKGKASAVYATAFARHLLTSGQAKVGDPILVGRDFRDSSPDVSATCIAALKKAGLNPLDCGTVPT PALALYGLSLKAGALMITGSHIPADRNGIKFYRPDGEIDKQDETAIAALAAEIEAEGISDEAATAEDHSAIAAELFYERN IALLPEKALSGLRIGVYQHSTVARDLFVDVLAHYGADVVPLGRSDSFIPVDTEAVSPETLALLRKWSPEHSLDAIVSADG DGDRPLLTDENGVPLRGDLIGLITANFLDAGVVVTPVTSNSGIEASGSFEVIRTKVGSPFVIAGMAQALAEGKNGVMGFE ANGGLLTASAFTLNGRPLSPLPTRDSFLPILAVLLLSAEQKKPLSEIAAAYRLPVAAADRLENFAQEKSAALMTHLRASR DNLDAFLAPVGAVKDLSDIDGLRVALTDGSTIHFRPSGNAPEMRCYVEAANQDEAETLLHKGLELIRNFG
Specific function: Unknown
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Escherichia coli, GI1789566, Length=477, Percent_Identity=27.0440251572327, Blast_Score=81, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.8 [H]
Molecular weight: Translated: 49476; Mature: 49344
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: PS00710 PGM_PMM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLKFGTSGLRGLSVDLKGKASAVYATAFARHLLTSGQAKVGDPILVGRDFRDSSPDVSA CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHH TCIAALKKAGLNPLDCGTVPTPALALYGLSLKAGALMITGSHIPADRNGIKFYRPDGEID HHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCC KQDETAIAALAAEIEAEGISDEAATAEDHSAIAAELFYERNIALLPEKALSGLRIGVYQH CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEECCHHHHCCCEEEEEEC STVARDLFVDVLAHYGADVVPLGRSDSFIPVDTEAVSPETLALLRKWSPEHSLDAIVSAD HHHHHHHHHHHHHHCCCCEEECCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCEEEEECC GDGDRPLLTDENGVPLRGDLIGLITANFLDAGVVVTPVTSNSGIEASGSFEVIRTKVGSP CCCCCCEEECCCCCCCCCCEEEEEHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCC FVIAGMAQALAEGKNGVMGFEANGGLLTASAFTLNGRPLSPLPTRDSFLPILAVLLLSAE EEHHHHHHHHHCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCC QKKPLSEIAAAYRLPVAAADRLENFAQEKSAALMTHLRASRDNLDAFLAPVGAVKDLSDI CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHCC DGLRVALTDGSTIHFRPSGNAPEMRCYVEAANQDEAETLLHKGLELIRNFG CCEEEEEECCCEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure SLKFGTSGLRGLSVDLKGKASAVYATAFARHLLTSGQAKVGDPILVGRDFRDSSPDVSA CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHH TCIAALKKAGLNPLDCGTVPTPALALYGLSLKAGALMITGSHIPADRNGIKFYRPDGEID HHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCC KQDETAIAALAAEIEAEGISDEAATAEDHSAIAAELFYERNIALLPEKALSGLRIGVYQH CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEECCHHHHCCCEEEEEEC STVARDLFVDVLAHYGADVVPLGRSDSFIPVDTEAVSPETLALLRKWSPEHSLDAIVSAD HHHHHHHHHHHHHHCCCCEEECCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCEEEEECC GDGDRPLLTDENGVPLRGDLIGLITANFLDAGVVVTPVTSNSGIEASGSFEVIRTKVGSP CCCCCCEEECCCCCCCCCCEEEEEHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCC FVIAGMAQALAEGKNGVMGFEANGGLLTASAFTLNGRPLSPLPTRDSFLPILAVLLLSAE EEHHHHHHHHHCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCC QKKPLSEIAAAYRLPVAAADRLENFAQEKSAALMTHLRASRDNLDAFLAPVGAVKDLSDI CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHCC DGLRVALTDGSTIHFRPSGNAPEMRCYVEAANQDEAETLLHKGLELIRNFG CCEEEEEECCCEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]