Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159185124
Identifier: 159185124
GI number: 159185124
Start: 2225342
End: 2226256
Strand: Direct
Name: 159185124
Synonym: Atu2254
Alternate gene names: NA
Gene position: 2225342-2226256 (Clockwise)
Preceding gene: 15889529
Following gene: 15889531
Centisome position: 78.31
GC content: 64.7
Gene sequence:
>915_bases GTGGCATCCATCGGCCAGATCGTAGACAAGACGCCGGGTAGCGAAGTTCTGGCGCGCGCGCGCCAGCGGGCCGCCCTGGT GCCGGACTGCATGGTCGAGGCAAAACGCATCGCCAACACCGTCACCGCCGGCTGGCACGGCCGCCGCAAACGCGGCATCG GCGAAAATTTCTGGCAGTTCCGCCCCTATGCCGAAGGCGAAAGCCTCTCGCGCATCGACTGGCGGCGCTCGGCCCGCGAC GACCATACCTATGTGCGCGACCGCGAGTGGGAAGCGGCCCACACCATCTGGCTGTGGGCCGACATGTCACCGTCGATGAT GTTCAAATCCACCCTCGGCTCCGTTTCCAAGGAAAGCCGGGCGCTGGTGCTGATGCTGGCGCTGGCGGAAATCCTGGCGC GCTCCGGCGAGCGCATCGGCTGCCCCGGCATCATGGAACCGGTCTCGGCCAGAAATGCCGCCGAACGGCTGGCCGCCGCC ATCATGCATGCACCGCTGACCTCAGGCATGCCAGACACCTCCATGATCCGCGGAGCAAGCGACATCGTCCTGATCGGCGA TTTTCTCGATGATGCGAAAAACGTGATGGAGCGGATTTCGCCGCTCGCGCGGCGGGGCCTGCGCGGCCATGTGGTGGAAA TCGCCGATCCGGCCGAAGAAACCTTCCCCTATTCCGGCCGCACCGAATTCAGCGATCCCGAAACAGGCGAAAAACTCGTG TCCGGCCGCGCCGAAACCATTCGCGAGGATTACACCCGCGCCTATCTCGCAAGACGTGAGGCGCTGTCCTCATCGCTTAG ACGTCTCGGCTGGAACTTCGTGTTCCACCGCACCGATCATCTCGCCTCCGAGGCGCTTGTCGCCGTTCACATGTATCTTT CCGGCGCGCCAGCACAGGGCGGTGGGCACCGATGA
Upstream 100 bases:
>100_bases TCGTGCCGAAGGCATGTCGGTGCGTGATGTCATCGCAGCCCTTGTGGAACAGGCGAAGAATTAAAAGACGCGAACCTAAC CTTTCGCGAAAGGAGTGCCT
Downstream 100 bases:
>100_bases GCGCATTGCCTTTCGTTTTCACCAGCCCCTACATCCTCTTCGGCTTACTGGCGTTGCCCGCCATCTGGTGGCTGCTGCGG CTAACCCCGCCGCGCCCCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MASIGQIVDKTPGSEVLARARQRAALVPDCMVEAKRIANTVTAGWHGRRKRGIGENFWQFRPYAEGESLSRIDWRRSARD DHTYVRDREWEAAHTIWLWADMSPSMMFKSTLGSVSKESRALVLMLALAEILARSGERIGCPGIMEPVSARNAAERLAAA IMHAPLTSGMPDTSMIRGASDIVLIGDFLDDAKNVMERISPLARRGLRGHVVEIADPAEETFPYSGRTEFSDPETGEKLV SGRAETIREDYTRAYLARREALSSSLRRLGWNFVFHRTDHLASEALVAVHMYLSGAPAQGGGHR
Sequences:
>Translated_304_residues MASIGQIVDKTPGSEVLARARQRAALVPDCMVEAKRIANTVTAGWHGRRKRGIGENFWQFRPYAEGESLSRIDWRRSARD DHTYVRDREWEAAHTIWLWADMSPSMMFKSTLGSVSKESRALVLMLALAEILARSGERIGCPGIMEPVSARNAAERLAAA IMHAPLTSGMPDTSMIRGASDIVLIGDFLDDAKNVMERISPLARRGLRGHVVEIADPAEETFPYSGRTEFSDPETGEKLV SGRAETIREDYTRAYLARREALSSSLRRLGWNFVFHRTDHLASEALVAVHMYLSGAPAQGGGHR >Mature_303_residues ASIGQIVDKTPGSEVLARARQRAALVPDCMVEAKRIANTVTAGWHGRRKRGIGENFWQFRPYAEGESLSRIDWRRSARDD HTYVRDREWEAAHTIWLWADMSPSMMFKSTLGSVSKESRALVLMLALAEILARSGERIGCPGIMEPVSARNAAERLAAAI MHAPLTSGMPDTSMIRGASDIVLIGDFLDDAKNVMERISPLARRGLRGHVVEIADPAEETFPYSGRTEFSDPETGEKLVS GRAETIREDYTRAYLARREALSSSLRRLGWNFVFHRTDHLASEALVAVHMYLSGAPAQGGGHR
Specific function: Unknown
COG id: COG1721
COG function: function code R; Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33732; Mature: 33601
Theoretical pI: Translated: 8.69; Mature: 8.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASIGQIVDKTPGSEVLARARQRAALVPDCMVEAKRIANTVTAGWHGRRKRGIGENFWQF CCCHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHC RPYAEGESLSRIDWRRSARDDHTYVRDREWEAAHTIWLWADMSPSMMFKSTLGSVSKESR CCCCCCCCHHHHHHHHCCCCCCCHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH ALVLMLALAEILARSGERIGCPGIMEPVSARNAAERLAAAIMHAPLTSGMPDTSMIRGAS HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCC DIVLIGDFLDDAKNVMERISPLARRGLRGHVVEIADPAEETFPYSGRTEFSDPETGEKLV CEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCCCCCCHHHHHH SGRAETIREDYTRAYLARREALSSSLRRLGWNFVFHRTDHLASEALVAVHMYLSGAPAQG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECHHHHHHHHHHHHHHHHCCCCCCC GGHR CCCC >Mature Secondary Structure ASIGQIVDKTPGSEVLARARQRAALVPDCMVEAKRIANTVTAGWHGRRKRGIGENFWQF CCHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHC RPYAEGESLSRIDWRRSARDDHTYVRDREWEAAHTIWLWADMSPSMMFKSTLGSVSKESR CCCCCCCCHHHHHHHHCCCCCCCHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH ALVLMLALAEILARSGERIGCPGIMEPVSARNAAERLAAAIMHAPLTSGMPDTSMIRGAS HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCC DIVLIGDFLDDAKNVMERISPLARRGLRGHVVEIADPAEETFPYSGRTEFSDPETGEKLV CEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCCCCCCHHHHHH SGRAETIREDYTRAYLARREALSSSLRRLGWNFVFHRTDHLASEALVAVHMYLSGAPAQG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECHHHHHHHHHHHHHHHHCCCCCCC GGHR CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA