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The map label for this gene is cph1 [H]

Identifier: 159185002

GI number: 159185002

Start: 1950746

End: 1952200

Strand: Reverse

Name: cph1 [H]

Synonym: Atu1986

Alternate gene names: 159185002

Gene position: 1952200-1950746 (Counterclockwise)

Preceding gene: 159185003

Following gene: 15889277

Centisome position: 68.7

GC content: 55.95

Gene sequence:

>1455_bases
ATGCTTGCCGTGGGTGTCGCTATTTTGATTGGCATGGTCTCCATGTCGTTGTGGCTGGTGCAGGTGAATAACCGCTATTC
CCAGGAAACAGCGGAACTCCGCCGTTTTCGTGCCGCTGTTTTGGATGTGCTGACGACGATGCAGGACATCGAGACCGGCC
AGAGGGGATATCTGCTCACGAATAATCGCGATTATCTGGGGCCTTATGAAGAAGCCCTGCGTGATTTGCCCCAACGCCAG
TCAAGACTTTTCGATCTTCTGAAGGAAGAGGAGCAATACAAGCAGTCTCTTTCGGGCCTGAGGCAGGCGATCGATGCGAA
GCTGGCTGAGACCCGCGAGACCATCGATCTGCAGCGTTCGGGCCGAATAACGGAGGCGGTTGAGGTCGTCCGCAATAATG
ACGGCAAACGCTTCATGAACGAGATCAGGATTATTCTGTCGGACTTGCAATCGGATACGGATGATCGGCTGCGGATCATC
GTTGCGGATCAACTCGGGGCTGCCAATACGCTGCGCTGGGTAACGGTCGGCGGTGCGTTCGCGATCCTCATTGTGGTCGG
TGGTTCGATCTTCCTCGTCTTTACCTATGTCCGTGCCCTGAACAGGTCGCGGGAGGATGTTGGTGAGCTCAATCGTCATC
TTGAAGAACGTGTCGAGGAAAGAACGCGGGATCTTCGCCGCGCCAATCAGGAAATCCAGCGCTTCGCCTATATCGTGACG
CATGACCTGCGCGCGCCGCTCGTCAATATCATGGGCTTCCTCTCTGAATTCGATACGTCGCTGAAGCCGGTGACACGTTA
TGTTCTCGCAGATGGCGAGTCGCTGCCGGAGGATGTCATCCGTGAGGCGCGGCTGGCGGTTGAAGAGGATATTCCTGAGG
CCATCGGCTTTATCCGCTCGTCCACGCGCAAAATGGATCAGCTGATCAACGCCATCCTGAAAATATCCCGTGACGGCCAG
CGAAAGCTGCAGCCGGAAAAGGTCGATATCGAAACGTTGCTTTCGTCGCTGTCCGAGACGGTGCGCCACCAGATCAACGC
CAATGGCGGCGAGATCGAGGTCGATACGCCGAAGCTGACGATCGTGACCGACCGGATATCTCTCGATCAGATACTCGGAA
ATCTCTTCGATAACGCGGTGAAATACCAGATGCCTGGTCGTCCACTGAGACTGACGGCCCGGGCCTATCCGGCCGGACGG
GGTGCGATTTGCATAGAGGTCGCAGACAATGGGCGCGGTATCGGCGAACAGGATCTCGAACGGGTTTTCGAGCTCTTTCG
CCGGGCGGGTAGTCAGGATCAGCCGGGTGAGGGCATTGGTCTCGCGCATGTTCGTTCGCTAATCAGAAATTTAGGAGGTG
ACATTAAAGTCGAGTCTAAACTTGGTGAGGGCAGCACGTTTGTCCTGCTGATGCCGAGTGACCTCAGACGCGTGACGAAG
GAAAGCGAAAAATGA

Upstream 100 bases:

>100_bases
CTCCGGTGTCGTCCTACTCTAGTTTGCACAATTAATTCGTGCCTACCGGGAATGTAGTTCTGTGACTGGTTTTTCACCGT
TTGCCCAACGAAGCCTTTTG

Downstream 100 bases:

>100_bases
AAGCGACCGGTCAGGAAGTAACGATCGTGATGATCGAAGATGACGAAGGCCATGCCCGGCTGATCGAGAAAAACGTGCGG
CGCGCCGGCGTGAACAACGA

Product: two component sensor kinase

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MLAVGVAILIGMVSMSLWLVQVNNRYSQETAELRRFRAAVLDVLTTMQDIETGQRGYLLTNNRDYLGPYEEALRDLPQRQ
SRLFDLLKEEEQYKQSLSGLRQAIDAKLAETRETIDLQRSGRITEAVEVVRNNDGKRFMNEIRIILSDLQSDTDDRLRII
VADQLGAANTLRWVTVGGAFAILIVVGGSIFLVFTYVRALNRSREDVGELNRHLEERVEERTRDLRRANQEIQRFAYIVT
HDLRAPLVNIMGFLSEFDTSLKPVTRYVLADGESLPEDVIREARLAVEEDIPEAIGFIRSSTRKMDQLINAILKISRDGQ
RKLQPEKVDIETLLSSLSETVRHQINANGGEIEVDTPKLTIVTDRISLDQILGNLFDNAVKYQMPGRPLRLTARAYPAGR
GAICIEVADNGRGIGEQDLERVFELFRRAGSQDQPGEGIGLAHVRSLIRNLGGDIKVESKLGEGSTFVLLMPSDLRRVTK
ESEK

Sequences:

>Translated_484_residues
MLAVGVAILIGMVSMSLWLVQVNNRYSQETAELRRFRAAVLDVLTTMQDIETGQRGYLLTNNRDYLGPYEEALRDLPQRQ
SRLFDLLKEEEQYKQSLSGLRQAIDAKLAETRETIDLQRSGRITEAVEVVRNNDGKRFMNEIRIILSDLQSDTDDRLRII
VADQLGAANTLRWVTVGGAFAILIVVGGSIFLVFTYVRALNRSREDVGELNRHLEERVEERTRDLRRANQEIQRFAYIVT
HDLRAPLVNIMGFLSEFDTSLKPVTRYVLADGESLPEDVIREARLAVEEDIPEAIGFIRSSTRKMDQLINAILKISRDGQ
RKLQPEKVDIETLLSSLSETVRHQINANGGEIEVDTPKLTIVTDRISLDQILGNLFDNAVKYQMPGRPLRLTARAYPAGR
GAICIEVADNGRGIGEQDLERVFELFRRAGSQDQPGEGIGLAHVRSLIRNLGGDIKVESKLGEGSTFVLLMPSDLRRVTK
ESEK
>Mature_484_residues
MLAVGVAILIGMVSMSLWLVQVNNRYSQETAELRRFRAAVLDVLTTMQDIETGQRGYLLTNNRDYLGPYEEALRDLPQRQ
SRLFDLLKEEEQYKQSLSGLRQAIDAKLAETRETIDLQRSGRITEAVEVVRNNDGKRFMNEIRIILSDLQSDTDDRLRII
VADQLGAANTLRWVTVGGAFAILIVVGGSIFLVFTYVRALNRSREDVGELNRHLEERVEERTRDLRRANQEIQRFAYIVT
HDLRAPLVNIMGFLSEFDTSLKPVTRYVLADGESLPEDVIREARLAVEEDIPEAIGFIRSSTRKMDQLINAILKISRDGQ
RKLQPEKVDIETLLSSLSETVRHQINANGGEIEVDTPKLTIVTDRISLDQILGNLFDNAVKYQMPGRPLRLTARAYPAGR
GAICIEVADNGRGIGEQDLERVFELFRRAGSQDQPGEGIGLAHVRSLIRNLGGDIKVESKLGEGSTFVLLMPSDLRRVTK
ESEK

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=271, Percent_Identity=29.520295202952, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1788713, Length=275, Percent_Identity=26.9090909090909, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI145693157, Length=269, Percent_Identity=27.8810408921933, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1789149, Length=279, Percent_Identity=28.3154121863799, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1790436, Length=306, Percent_Identity=27.7777777777778, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1786600, Length=324, Percent_Identity=25.9259259259259, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 54585; Mature: 54585

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAVGVAILIGMVSMSLWLVQVNNRYSQETAELRRFRAAVLDVLTTMQDIETGQRGYLLT
CHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
NNRDYLGPYEEALRDLPQRQSRLFDLLKEEEQYKQSLSGLRQAIDAKLAETRETIDLQRS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRITEAVEVVRNNDGKRFMNEIRIILSDLQSDTDDRLRIIVADQLGAANTLRWVTVGGAF
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEECHHH
AILIVVGGSIFLVFTYVRALNRSREDVGELNRHLEERVEERTRDLRRANQEIQRFAYIVT
HHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDLRAPLVNIMGFLSEFDTSLKPVTRYVLADGESLPEDVIREARLAVEEDIPEAIGFIRS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
STRKMDQLINAILKISRDGQRKLQPEKVDIETLLSSLSETVRHQINANGGEIEVDTPKLT
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCEEE
IVTDRISLDQILGNLFDNAVKYQMPGRPLRLTARAYPAGRGAICIEVADNGRGIGEQDLE
EEECCCCHHHHHHHHHHHHHEECCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCHHHHH
RVFELFRRAGSQDQPGEGIGLAHVRSLIRNLGGDIKVESKLGEGSTFVLLMPSDLRRVTK
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCHHHHHHHH
ESEK
CCCC
>Mature Secondary Structure
MLAVGVAILIGMVSMSLWLVQVNNRYSQETAELRRFRAAVLDVLTTMQDIETGQRGYLLT
CHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
NNRDYLGPYEEALRDLPQRQSRLFDLLKEEEQYKQSLSGLRQAIDAKLAETRETIDLQRS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRITEAVEVVRNNDGKRFMNEIRIILSDLQSDTDDRLRIIVADQLGAANTLRWVTVGGAF
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEECHHH
AILIVVGGSIFLVFTYVRALNRSREDVGELNRHLEERVEERTRDLRRANQEIQRFAYIVT
HHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDLRAPLVNIMGFLSEFDTSLKPVTRYVLADGESLPEDVIREARLAVEEDIPEAIGFIRS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
STRKMDQLINAILKISRDGQRKLQPEKVDIETLLSSLSETVRHQINANGGEIEVDTPKLT
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCEEE
IVTDRISLDQILGNLFDNAVKYQMPGRPLRLTARAYPAGRGAICIEVADNGRGIGEQDLE
EEECCCCHHHHHHHHHHHHHEECCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCHHHHH
RVFELFRRAGSQDQPGEGIGLAHVRSLIRNLGGDIKVESKLGEGSTFVLLMPSDLRRVTK
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCHHHHHHHH
ESEK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]