Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159185001
Identifier: 159185001
GI number: 159185001
Start: 1948472
End: 1949182
Strand: Direct
Name: 159185001
Synonym: Atu1983
Alternate gene names: NA
Gene position: 1948472-1949182 (Clockwise)
Preceding gene: 159185000
Following gene: 15889279
Centisome position: 68.57
GC content: 61.18
Gene sequence:
>711_bases ATGACAACGGGCGACCAGAGCGGCGGAATGCACGCGCGCGATGAAATCCTCGCCGGCGAATATGTGCTGGGCGTTCTGTC GCTCGAAAAGCGTCGCGAGGTGGAAAGGCGCATTCAGGACGAGGAAGCCTTCGCGCAACTCGTGCGGCGCTGGGAAGCGG AATTCTCCGACTTCAACGCCGAATATCAGGAACAGACGCCGAGCCCGACCGTCCTCGCCCGCATCGAAGAGCGCCTGTTT GGCAGCAGGGCTGTCAATACCAATGGCAGTCTCTGGAACTCCGCGTCCTTCTGGCGCTGGATATCAGTGGCCACCAGCGC AACCGCCGTGGCTGCCGTCGTTTATGCTGCCTTCCCCGACCAATGGCAGGGCACCACGCCGCTTGTGGCCGAACTCGCGA CAACCGACAGCCAGGTCAATCTTCTCGCTTCCTATGATTCGGAATCGGGAAGAATGCACATCGTGCCCGTAGCAACCGGC AAGACGGACGAAAAATCATTGGAATTGTGGCTGGTCATGGATGGCGGCAAGACACGCTCGCTTGGCGTTTTCCAGCCCGG CACGAACGGCGACCTCATCATTCCCGCCGACATGCGCGGCAACATAACGGATGGTACGACCTTCGCGATCAGCGTGGAAC CCTTTGGAGGCTCGCCGACGGGTCAGGCAACCGGCCCGGTCATCGCTGTCGGCACCGCACGGCATTTGTGA
Upstream 100 bases:
>100_bases TGAGCTATCTTGAACTCTCCGATGAATTGCGCGTACCGCTGAACACGGTCAGAACCTGGCTGCGGCGCAGTCTTCTCAAA CTCAGAGAGTGCATGCAGCG
Downstream 100 bases:
>100_bases GGTTTCAAACCGGTTTTAGTATCACTTGAGAGAAGCTTATGCGCTGCTCATCATTGGTGCTGGTAAAGGCGGGAAAATCA ATCCTTACCGCTTCTCATGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 236; Mature: 235
Protein sequence:
>236_residues MTTGDQSGGMHARDEILAGEYVLGVLSLEKRREVERRIQDEEAFAQLVRRWEAEFSDFNAEYQEQTPSPTVLARIEERLF GSRAVNTNGSLWNSASFWRWISVATSATAVAAVVYAAFPDQWQGTTPLVAELATTDSQVNLLASYDSESGRMHIVPVATG KTDEKSLELWLVMDGGKTRSLGVFQPGTNGDLIIPADMRGNITDGTTFAISVEPFGGSPTGQATGPVIAVGTARHL
Sequences:
>Translated_236_residues MTTGDQSGGMHARDEILAGEYVLGVLSLEKRREVERRIQDEEAFAQLVRRWEAEFSDFNAEYQEQTPSPTVLARIEERLF GSRAVNTNGSLWNSASFWRWISVATSATAVAAVVYAAFPDQWQGTTPLVAELATTDSQVNLLASYDSESGRMHIVPVATG KTDEKSLELWLVMDGGKTRSLGVFQPGTNGDLIIPADMRGNITDGTTFAISVEPFGGSPTGQATGPVIAVGTARHL >Mature_235_residues TTGDQSGGMHARDEILAGEYVLGVLSLEKRREVERRIQDEEAFAQLVRRWEAEFSDFNAEYQEQTPSPTVLARIEERLFG SRAVNTNGSLWNSASFWRWISVATSATAVAAVVYAAFPDQWQGTTPLVAELATTDSQVNLLASYDSESGRMHIVPVATGK TDEKSLELWLVMDGGKTRSLGVFQPGTNGDLIIPADMRGNITDGTTFAISVEPFGGSPTGQATGPVIAVGTARHL
Specific function: Unknown
COG id: COG5343
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25567; Mature: 25436
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTGDQSGGMHARDEILAGEYVLGVLSLEKRREVERRIQDEEAFAQLVRRWEAEFSDFNA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC EYQEQTPSPTVLARIEERLFGSRAVNTNGSLWNSASFWRWISVATSATAVAAVVYAAFPD HHHHCCCCCHHHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC QWQGTTPLVAELATTDSQVNLLASYDSESGRMHIVPVATGKTDEKSLELWLVMDGGKTRS CCCCCCHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCE LGVFQPGTNGDLIIPADMRGNITDGTTFAISVEPFGGSPTGQATGPVIAVGTARHL EEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCC >Mature Secondary Structure TTGDQSGGMHARDEILAGEYVLGVLSLEKRREVERRIQDEEAFAQLVRRWEAEFSDFNA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC EYQEQTPSPTVLARIEERLFGSRAVNTNGSLWNSASFWRWISVATSATAVAAVVYAAFPD HHHHCCCCCHHHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC QWQGTTPLVAELATTDSQVNLLASYDSESGRMHIVPVATGKTDEKSLELWLVMDGGKTRS CCCCCCHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCE LGVFQPGTNGDLIIPADMRGNITDGTTFAISVEPFGGSPTGQATGPVIAVGTARHL EEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA