Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yejA [C]
Identifier: 159184911
GI number: 159184911
Start: 1758155
End: 1760002
Strand: Direct
Name: yejA [C]
Synonym: Atu1774
Alternate gene names: 159184911
Gene position: 1758155-1760002 (Clockwise)
Preceding gene: 159185436
Following gene: 159184912
Centisome position: 61.87
GC content: 59.36
Gene sequence:
>1848_bases ATGCGCAACCTTGCGGCCCTCCTCCCCGCATTGTTCCTTTTGGGATCATCCCTGCTTCCCGCCGGGACGGCCCTGGCGCA ACCGCTGCACGGCATATCCATGCATGGCACGCCGGAGCTTCCCGCAGACTTCCGCCACTTCCCTTATGTCAATCCCGACG TGAAGAAGGGCGGCCGCATCTCCTATGGCGTCGTTGGCACCTTCGACAGCCTCAATCCCTTCGTGCTCAAGGGAATGCGC ACCACCGCACGCGGCGTCTGGGATCCGGAATTCGGCAATCTCCTCTACGAATCGCTGATGCTGCGCTCCAGTGACGAGCC TTTCAGCCTTTATGGCCTCTTGGCCGAAACCGTGGAATGGGACGACGAGCGCAGCTTCATCCAGTTCAACATCAACCCCA GGGCAAAATGGTCTGACGGCAAGCCAGTGACGCCTGATGATGTGATCTTCACCTTCAGCCTCTTGAAGGAAAAAGGCCGC CCGCCCTTCAACAGCCGTCTGGACGGCGTGGCAAAAATGGAAAAGGTCGGTGATCGCGGCGTGCGCTTCACCTTTAATGA CAAGGCGAACCGCGAAACGCCGCTCATTCTCGCCTCCTCCACACCGATCCTGCCGAAACATGCGATCGACCCGGAAAAAT TCGAGCAGGCAGGCCTTGGGCCAGTCGTCGGCTCGGGTCCATACCGAATCAAGACCCTGCGGCCGGGCGAGCGAATCATC TGGGAACGCAATCCGGATTATTGGGGCAAGGACATCCCCGGCAAGGTCGGCTTCGACAATTACGACGAGATCAGCGTGAC CTATTTCCTTCAGGTCACCACCATGTTCGAAGCCTTCAAGAAGGGCGATATCGACATCTATCCCGAAGGTGACGCCATCA ACGGCACCTCCGATACCTCGCATTGGGGACAGGCCTATAATTTCCCGGCCGTCCATCGCGGCGATATCGTCAAGGACGTC TTCCAGCCGCGCCTGCCGACCGGCATGTTCGGCCTCGTCTTCAACACACGCCGGGCCACCTTTGCCGATGAAAAAGTGCG TGAAGGCCTGTCCTATGCGCTCGATTTCGAATGGCTGAACAGGAACATCCTCGGTGGCTCCTTCAAGCGCACCCAGAGCT ATTGGCAGAATTCCCCGCTCGGAGCCTATGGCAATGCCGCAGATGAGCGCGAGCTTGCGCTGCTGGGCGACGCTGCGAAA ACCATGCCTGCGGAACTACTGGCGGGCACCTATGCCATGCCGACCACCGATGGCACGGGTGCTGACCGCAAGGTATTGAA ACTGGCCGTCGACAAGCTGAAAGAGGCCGGATACAGCATCAAGAATGGCAAAATGTCCGACGCCAATGGCCGTCAGCTCG CCTTCGAGATCATGACCCAGAACCCGGCGCAGGAGCGCATCGCGCTTGCCTATCAGCGCTCGCTCAACCTGATTGGCGTC GCCATGGGCATCCGCTCGGTGGATGACGGGCAATATCAGGCCCGTTCGAACAGCTTCGATTACGACATGATCATCCGCTC CCTGCCCTCCTCGCTTTCGCCGGGCATGGAGCAGCTGAACCGCTGGAACTCGCTCTCCCGCGATGCGCAGGGCAGCTTCA ACTATGCGGGCGTTGCCAATCCCGATATCGACCGGATGATAGAGGCGCTGCTGCAGGCGCGCTCGACGGAAGATTTCCAG GCGGCGGTGCGCGCCTATGACCGTCTGCTCGTGGCCGGCCACTACATTATTCCGCTCTATTACATCGGCGCGCAATGGGT TGCGCGCTGGAAATATATCGACCGTCCGGATATGACCCCGATATCAGGAAATCAGAAACAGACCTGGTGGGATGCAAGGG TGCAATAA
Upstream 100 bases:
>100_bases GCATGGGTCATGCGATATCCGTATGCTACATATCTGCCAGAATCATGACGATAAACCGGTTGTGACGCAAACCGGACGGA CAGTTAGACAGGATAGTGAC
Downstream 100 bases:
>100_bases CCCGCCGCCGCCCGGTCCAGACAAGGGAAGATGAAACCATGGAACGCATCGTTGTCGACGTCGTATCGGATATGGTCTGC CCCTGGTGTTATCTCGGCAA
Product: ABC transporter, substrate binding protein (peptide)
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 615; Mature: 615
Protein sequence:
>615_residues MRNLAALLPALFLLGSSLLPAGTALAQPLHGISMHGTPELPADFRHFPYVNPDVKKGGRISYGVVGTFDSLNPFVLKGMR TTARGVWDPEFGNLLYESLMLRSSDEPFSLYGLLAETVEWDDERSFIQFNINPRAKWSDGKPVTPDDVIFTFSLLKEKGR PPFNSRLDGVAKMEKVGDRGVRFTFNDKANRETPLILASSTPILPKHAIDPEKFEQAGLGPVVGSGPYRIKTLRPGERII WERNPDYWGKDIPGKVGFDNYDEISVTYFLQVTTMFEAFKKGDIDIYPEGDAINGTSDTSHWGQAYNFPAVHRGDIVKDV FQPRLPTGMFGLVFNTRRATFADEKVREGLSYALDFEWLNRNILGGSFKRTQSYWQNSPLGAYGNAADERELALLGDAAK TMPAELLAGTYAMPTTDGTGADRKVLKLAVDKLKEAGYSIKNGKMSDANGRQLAFEIMTQNPAQERIALAYQRSLNLIGV AMGIRSVDDGQYQARSNSFDYDMIIRSLPSSLSPGMEQLNRWNSLSRDAQGSFNYAGVANPDIDRMIEALLQARSTEDFQ AAVRAYDRLLVAGHYIIPLYYIGAQWVARWKYIDRPDMTPISGNQKQTWWDARVQ
Sequences:
>Translated_615_residues MRNLAALLPALFLLGSSLLPAGTALAQPLHGISMHGTPELPADFRHFPYVNPDVKKGGRISYGVVGTFDSLNPFVLKGMR TTARGVWDPEFGNLLYESLMLRSSDEPFSLYGLLAETVEWDDERSFIQFNINPRAKWSDGKPVTPDDVIFTFSLLKEKGR PPFNSRLDGVAKMEKVGDRGVRFTFNDKANRETPLILASSTPILPKHAIDPEKFEQAGLGPVVGSGPYRIKTLRPGERII WERNPDYWGKDIPGKVGFDNYDEISVTYFLQVTTMFEAFKKGDIDIYPEGDAINGTSDTSHWGQAYNFPAVHRGDIVKDV FQPRLPTGMFGLVFNTRRATFADEKVREGLSYALDFEWLNRNILGGSFKRTQSYWQNSPLGAYGNAADERELALLGDAAK TMPAELLAGTYAMPTTDGTGADRKVLKLAVDKLKEAGYSIKNGKMSDANGRQLAFEIMTQNPAQERIALAYQRSLNLIGV AMGIRSVDDGQYQARSNSFDYDMIIRSLPSSLSPGMEQLNRWNSLSRDAQGSFNYAGVANPDIDRMIEALLQARSTEDFQ AAVRAYDRLLVAGHYIIPLYYIGAQWVARWKYIDRPDMTPISGNQKQTWWDARVQ >Mature_615_residues MRNLAALLPALFLLGSSLLPAGTALAQPLHGISMHGTPELPADFRHFPYVNPDVKKGGRISYGVVGTFDSLNPFVLKGMR TTARGVWDPEFGNLLYESLMLRSSDEPFSLYGLLAETVEWDDERSFIQFNINPRAKWSDGKPVTPDDVIFTFSLLKEKGR PPFNSRLDGVAKMEKVGDRGVRFTFNDKANRETPLILASSTPILPKHAIDPEKFEQAGLGPVVGSGPYRIKTLRPGERII WERNPDYWGKDIPGKVGFDNYDEISVTYFLQVTTMFEAFKKGDIDIYPEGDAINGTSDTSHWGQAYNFPAVHRGDIVKDV FQPRLPTGMFGLVFNTRRATFADEKVREGLSYALDFEWLNRNILGGSFKRTQSYWQNSPLGAYGNAADERELALLGDAAK TMPAELLAGTYAMPTTDGTGADRKVLKLAVDKLKEAGYSIKNGKMSDANGRQLAFEIMTQNPAQERIALAYQRSLNLIGV AMGIRSVDDGQYQARSNSFDYDMIIRSLPSSLSPGMEQLNRWNSLSRDAQGSFNYAGVANPDIDRMIEALLQARSTEDFQ AAVRAYDRLLVAGHYIIPLYYIGAQWVARWKYIDRPDMTPISGNQKQTWWDARVQ
Specific function: Unknown
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI87082063, Length=583, Percent_Identity=33.2761578044597, Blast_Score=308, Evalue=1e-84,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 68741; Mature: 68741
Theoretical pI: Translated: 6.66; Mature: 6.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNLAALLPALFLLGSSLLPAGTALAQPLHGISMHGTPELPADFRHFPYVNPDVKKGGRI CCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE SYGVVGTFDSLNPFVLKGMRTTARGVWDPEFGNLLYESLMLRSSDEPFSLYGLLAETVEW EEEEEECCCCCCHHHHHCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC DDERSFIQFNINPRAKWSDGKPVTPDDVIFTFSLLKEKGRPPFNSRLDGVAKMEKVGDRG CCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC VRFTFNDKANRETPLILASSTPILPKHAIDPEKFEQAGLGPVVGSGPYRIKTLRPGERII EEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCEEE WERNPDYWGKDIPGKVGFDNYDEISVTYFLQVTTMFEAFKKGDIDIYPEGDAINGTSDTS EECCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHCCCEEEECCCCCCCCCCCCC HWGQAYNFPAVHRGDIVKDVFQPRLPTGMFGLVFNTRRATFADEKVREGLSYALDFEWLN CCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHCCHHHEEEHHHHC RNILGGSFKRTQSYWQNSPLGAYGNAADERELALLGDAAKTMPAELLAGTYAMPTTDGTG CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCC ADRKVLKLAVDKLKEAGYSIKNGKMSDANGRQLAFEIMTQNPAQERIALAYQRSLNLIGV CHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEE AMGIRSVDDGQYQARSNSFDYDMIIRSLPSSLSPGMEQLNRWNSLSRDAQGSFNYAGVAN ECCCCCCCCCCHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC PDIDRMIEALLQARSTEDFQAAVRAYDRLLVAGHYIIPLYYIGAQWVARWKYIDRPDMTP CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCC ISGNQKQTWWDARVQ CCCCCCCCCCCCCCC >Mature Secondary Structure MRNLAALLPALFLLGSSLLPAGTALAQPLHGISMHGTPELPADFRHFPYVNPDVKKGGRI CCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE SYGVVGTFDSLNPFVLKGMRTTARGVWDPEFGNLLYESLMLRSSDEPFSLYGLLAETVEW EEEEEECCCCCCHHHHHCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC DDERSFIQFNINPRAKWSDGKPVTPDDVIFTFSLLKEKGRPPFNSRLDGVAKMEKVGDRG CCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC VRFTFNDKANRETPLILASSTPILPKHAIDPEKFEQAGLGPVVGSGPYRIKTLRPGERII EEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCEEE WERNPDYWGKDIPGKVGFDNYDEISVTYFLQVTTMFEAFKKGDIDIYPEGDAINGTSDTS EECCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHCCCEEEECCCCCCCCCCCCC HWGQAYNFPAVHRGDIVKDVFQPRLPTGMFGLVFNTRRATFADEKVREGLSYALDFEWLN CCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHCCHHHEEEHHHHC RNILGGSFKRTQSYWQNSPLGAYGNAADERELALLGDAAKTMPAELLAGTYAMPTTDGTG CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCC ADRKVLKLAVDKLKEAGYSIKNGKMSDANGRQLAFEIMTQNPAQERIALAYQRSLNLIGV CHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEE AMGIRSVDDGQYQARSNSFDYDMIIRSLPSSLSPGMEQLNRWNSLSRDAQGSFNYAGVAN ECCCCCCCCCCHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC PDIDRMIEALLQARSTEDFQAAVRAYDRLLVAGHYIIPLYYIGAQWVARWKYIDRPDMTP CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCC ISGNQKQTWWDARVQ CCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA