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The map label for this gene is dgdR [H]

Identifier: 159184905

GI number: 159184905

Start: 1749211

End: 1750107

Strand: Reverse

Name: dgdR [H]

Synonym: Atu1765

Alternate gene names: 159184905

Gene position: 1750107-1749211 (Counterclockwise)

Preceding gene: 159184908

Following gene: 159185409

Centisome position: 61.59

GC content: 60.76

Gene sequence:

>897_bases
ATGACCGTGACTTTCCGCCAACCGCTGCCGTTGCTGGATAACGACATATTGAGAACCTTCGTCGCCATTGCCGAAACGGG
GAATTTTTCCACCGCAGCGGAAGTGGTGTTCAGAACGCCCTCGGCCGTTTCCATGCAGATCAAGAAGCTGGAGGAGCAGT
TGAAGACGACGCTTTTCCTGCGCGATGCCCGCTCTGTGACATTGACGGCGCATGGCGAGACGCTTCTGACCTATGCGCGG
CGCATGATCGCGCTCTCCAACGAGGCGGTGTCGCGTTTCGTCATGCCGGAACTTTCAGGCGTTGTGCGGCTCGGGGCGCC
TGAGGATATTGGCGAGCGCGGTCTGCTGCCTGGCATTCTCAAGCGTTTTGCCGATGTTTTCCCCGGCATCATGATCGATG
TCACCATCGATTCCAGTTCCAACCTTTATAAGCGCATGGATGAGCAGCGGCTTGACCTCGCCCTCGTCAACTGTGCCTCG
CATCCGCTGCGGGACACGGGCGAGGTGCTGATGCGCGAACGTCTCGTCTGGGCCGGCGCCAAATGCGGCACGGCTTATCT
GCGTGATCCGCTGCCGATCTCGATCTGGGAAGAGGGTTGCATCTGGCGCTCGGAGGCAATCGTTTCGCTGGAACGGCGCG
GGCGCAATTTCCGCGTCGCCTATCTCAGCGGCCATACCATGGCACAGCGCGCAGCGATCGCGGCCGATCTTGCCATCGCC
CCGCTGCCGCGCTCCTATGTGCAGAACGACCTCGTCATTCTGGGCGACAAGGAAGGCCTGCCGGAGCTGGGCTCTTTCGA
TATTCGCCTGATCATGGGCGACAAGGCGTCGCGCCCTGTTCTTGCGGTGGCAGAGAGCATCCGCAATGCCTTTGTCGAGG
TCGCAAAGGCGGCGTAA

Upstream 100 bases:

>100_bases
TCACCCCGTTTGTCTATGTCACGGATGGTGCGCGCTTGTTGACATTCAATCAAACGAAATGATATCCATCTATAAATCAA
AATATTTGAAGGTGCGTGCC

Downstream 100 bases:

>100_bases
AGTCTGGGTAGCGCCGTGTGGAAGGCGGCTTTTAGCCAGCCATTGAATCCGCCGGCGCCGGACGGCCTGCGTCGCGGGTT
TGCCAGCTTCCGCGGCTGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MTVTFRQPLPLLDNDILRTFVAIAETGNFSTAAEVVFRTPSAVSMQIKKLEEQLKTTLFLRDARSVTLTAHGETLLTYAR
RMIALSNEAVSRFVMPELSGVVRLGAPEDIGERGLLPGILKRFADVFPGIMIDVTIDSSSNLYKRMDEQRLDLALVNCAS
HPLRDTGEVLMRERLVWAGAKCGTAYLRDPLPISIWEEGCIWRSEAIVSLERRGRNFRVAYLSGHTMAQRAAIAADLAIA
PLPRSYVQNDLVILGDKEGLPELGSFDIRLIMGDKASRPVLAVAESIRNAFVEVAKAA

Sequences:

>Translated_298_residues
MTVTFRQPLPLLDNDILRTFVAIAETGNFSTAAEVVFRTPSAVSMQIKKLEEQLKTTLFLRDARSVTLTAHGETLLTYAR
RMIALSNEAVSRFVMPELSGVVRLGAPEDIGERGLLPGILKRFADVFPGIMIDVTIDSSSNLYKRMDEQRLDLALVNCAS
HPLRDTGEVLMRERLVWAGAKCGTAYLRDPLPISIWEEGCIWRSEAIVSLERRGRNFRVAYLSGHTMAQRAAIAADLAIA
PLPRSYVQNDLVILGDKEGLPELGSFDIRLIMGDKASRPVLAVAESIRNAFVEVAKAA
>Mature_297_residues
TVTFRQPLPLLDNDILRTFVAIAETGNFSTAAEVVFRTPSAVSMQIKKLEEQLKTTLFLRDARSVTLTAHGETLLTYARR
MIALSNEAVSRFVMPELSGVVRLGAPEDIGERGLLPGILKRFADVFPGIMIDVTIDSSSNLYKRMDEQRLDLALVNCASH
PLRDTGEVLMRERLVWAGAKCGTAYLRDPLPISIWEEGCIWRSEAIVSLERRGRNFRVAYLSGHTMAQRAAIAADLAIAP
LPRSYVQNDLVILGDKEGLPELGSFDIRLIMGDKASRPVLAVAESIRNAFVEVAKAA

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=283, Percent_Identity=30.7420494699647, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI48994962, Length=150, Percent_Identity=32, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786713, Length=74, Percent_Identity=51.3513513513513, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787806, Length=165, Percent_Identity=27.8787878787879, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=32.8671328671329, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788297, Length=168, Percent_Identity=30.3571428571429, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786448, Length=148, Percent_Identity=33.1081081081081, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788481, Length=259, Percent_Identity=23.5521235521236, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32898; Mature: 32766

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVTFRQPLPLLDNDILRTFVAIAETGNFSTAAEVVFRTPSAVSMQIKKLEEQLKTTLFL
CEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHEEECCCHHHHHHHHHHHHHHHHHHE
RDARSVTLTAHGETLLTYARRMIALSNEAVSRFVMPELSGVVRLGAPEDIGERGLLPGIL
ECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHH
KRFADVFPGIMIDVTIDSSSNLYKRMDEQRLDLALVNCASHPLRDTGEVLMRERLVWAGA
HHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHEEHHCCCCCCHHHHHHHHHHHHHCCC
KCGTAYLRDPLPISIWEEGCIWRSEAIVSLERRGRNFRVAYLSGHTMAQRAAIAADLAIA
CCCHHHHCCCCCEEEECCCCEEHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHCC
PLPRSYVQNDLVILGDKEGLPELGSFDIRLIMGDKASRPVLAVAESIRNAFVEVAKAA
CCCHHHHCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TVTFRQPLPLLDNDILRTFVAIAETGNFSTAAEVVFRTPSAVSMQIKKLEEQLKTTLFL
EEECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHEEECCCHHHHHHHHHHHHHHHHHHE
RDARSVTLTAHGETLLTYARRMIALSNEAVSRFVMPELSGVVRLGAPEDIGERGLLPGIL
ECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHH
KRFADVFPGIMIDVTIDSSSNLYKRMDEQRLDLALVNCASHPLRDTGEVLMRERLVWAGA
HHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHEEHHCCCCCCHHHHHHHHHHHHHCCC
KCGTAYLRDPLPISIWEEGCIWRSEAIVSLERRGRNFRVAYLSGHTMAQRAAIAADLAIA
CCCHHHHCCCCCEEEECCCCEEHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHCC
PLPRSYVQNDLVILGDKEGLPELGSFDIRLIMGDKASRPVLAVAESIRNAFVEVAKAA
CCCHHHHCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]