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The map label for this gene is ydiK [C]

Identifier: 159184894

GI number: 159184894

Start: 1725944

End: 1727182

Strand: Direct

Name: ydiK [C]

Synonym: Atu1739

Alternate gene names: 159184894

Gene position: 1725944-1727182 (Clockwise)

Preceding gene: 15889040

Following gene: 159184895

Centisome position: 60.74

GC content: 63.92

Gene sequence:

>1239_bases
GTGAGTAACATTGACAGCCGTAAGCAGAATGGCGAACCGAGATGGCTTGGTCCCGCCAGCCCGACGCGGATCGCCCTGAT
ACCGCCCATATCGGCTGCGCGCTGGCTTCTCCTTCTGGTCGTCCTTGCGGGCATCTATTTCTTCAACGGCTTTCTGGTTC
CGGTTCTCGCCGCCCTCGTCATCGGTTTCGCCAGCTGGCCGGTCTATACGCGGCTTTTGCGGCAGGTGGGCGGCAACACC
ACGCTCGGCGCCACCATTGCCATCATCCTCATCATCGCCTTCCTCGTGGTGCCGATCTTCATCGCCGCCTCCTATACGGC
AACCGAAATCCGCGAATGGTTCGGCTGGGCGGTGCATGTCAACAAGGCGGGCGCTCCCGTGCCGGACTGGATCGCGGCGC
TGCCGGGCATCGGCCCCTGGCTCGGCGAACAATGGGTGAAATATATCGGCACGCCGGGCGCGATCGGCGAAGTGATCCAA
CTCGTCAGCGGTGCCAATATCGGCAATATCTACAGGGCGATCCTCGCCGCCGGCAACGGCGCCTTCCACCTCGTGCTGAC
CCTGCTGTTCATGCTGATCGCGCTGTTTTTCGTGTATCGCAACGGCGCGGGCTTCACCCGCCAGATCGATCTCGTGGGTG
AGCGTATCCTGCCGACGCGCTGGGAACGCATTTCCCGCGTCGTGCCCGCCACCATCAGCTCCACCGTGACCGGCATGACT
CTGATCGCCATCGGCGAAGGCATCATCCTTGGCATCGCCTACTGGATCGCCGGCGTGCCCTCGCCCGTCACGCTCGGCGT
GCTTACCGGCGTCATGGCCCTCATTCCGGGCGGCGCGCCGCTTTCCTTCACGCTGGTGTCGATCTATCTGGTCGCCAGCG
GCTCGCCCGCCCACGGGCTGGCGCTGTTCGTCTGGGGTTCTGTCGAACTCTTCATCGTCGACAAGACCATCCGCCCGAAG
CTCGTCGGCGGCCCGATCAAGCTGCCCTTCCTGCCGACCTTTTTCGGCCTCGTCGGCGGCGTCAAGACCATGGGCTTCCT
CGGCCTCTTCATCGGCCCGGTGCTGATGGCGCTGCTGGTCGCGATCTGGCGCGAATGGGTGCGTGAAGTGGAAATTTCCG
CTGCCGTCAGCGCCGAGCTTCCGCCTCCGCCGCCCACACAGAACGATCCGGCCACGGAGGCCGTTTCGCATGAGGACGAC
AACGACGAAACGACAGCGTTTCGGAAAGCCGCTTTTTGA

Upstream 100 bases:

>100_bases
CACACAACGGTAATGTGATCCGGTTATATTGCACTTATATGTATCGGTGTGACAAAGTGAATGCACCCCTTTGAGGGGAG
AATGCGAGAAAGAGCCTGCC

Downstream 100 bases:

>100_bases
TTGGTGAAGCCTGAGGCAGATGCCGCGGTTCAGGTAAAGATAGATAATCCGCGAACCTTGCATCCGTCCATGCTCGGGCT
CATTTCGCGCATCTACGACT

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MSNIDSRKQNGEPRWLGPASPTRIALIPPISAARWLLLLVVLAGIYFFNGFLVPVLAALVIGFASWPVYTRLLRQVGGNT
TLGATIAIILIIAFLVVPIFIAASYTATEIREWFGWAVHVNKAGAPVPDWIAALPGIGPWLGEQWVKYIGTPGAIGEVIQ
LVSGANIGNIYRAILAAGNGAFHLVLTLLFMLIALFFVYRNGAGFTRQIDLVGERILPTRWERISRVVPATISSTVTGMT
LIAIGEGIILGIAYWIAGVPSPVTLGVLTGVMALIPGGAPLSFTLVSIYLVASGSPAHGLALFVWGSVELFIVDKTIRPK
LVGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALLVAIWREWVREVEISAAVSAELPPPPPTQNDPATEAVSHEDD
NDETTAFRKAAF

Sequences:

>Translated_412_residues
MSNIDSRKQNGEPRWLGPASPTRIALIPPISAARWLLLLVVLAGIYFFNGFLVPVLAALVIGFASWPVYTRLLRQVGGNT
TLGATIAIILIIAFLVVPIFIAASYTATEIREWFGWAVHVNKAGAPVPDWIAALPGIGPWLGEQWVKYIGTPGAIGEVIQ
LVSGANIGNIYRAILAAGNGAFHLVLTLLFMLIALFFVYRNGAGFTRQIDLVGERILPTRWERISRVVPATISSTVTGMT
LIAIGEGIILGIAYWIAGVPSPVTLGVLTGVMALIPGGAPLSFTLVSIYLVASGSPAHGLALFVWGSVELFIVDKTIRPK
LVGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALLVAIWREWVREVEISAAVSAELPPPPPTQNDPATEAVSHEDD
NDETTAFRKAAF
>Mature_411_residues
SNIDSRKQNGEPRWLGPASPTRIALIPPISAARWLLLLVVLAGIYFFNGFLVPVLAALVIGFASWPVYTRLLRQVGGNTT
LGATIAIILIIAFLVVPIFIAASYTATEIREWFGWAVHVNKAGAPVPDWIAALPGIGPWLGEQWVKYIGTPGAIGEVIQL
VSGANIGNIYRAILAAGNGAFHLVLTLLFMLIALFFVYRNGAGFTRQIDLVGERILPTRWERISRVVPATISSTVTGMTL
IAIGEGIILGIAYWIAGVPSPVTLGVLTGVMALIPGGAPLSFTLVSIYLVASGSPAHGLALFVWGSVELFIVDKTIRPKL
VGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALLVAIWREWVREVEISAAVSAELPPPPPTQNDPATEAVSHEDDN
DETTAFRKAAF

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=356, Percent_Identity=25.2808988764045, Blast_Score=78, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 44019; Mature: 43887

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS00024 HEMOPEXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIDSRKQNGEPRWLGPASPTRIALIPPISAARWLLLLVVLAGIYFFNGFLVPVLAALV
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGFASWPVYTRLLRQVGGNTTLGATIAIILIIAFLVVPIFIAASYTATEIREWFGWAVHV
HHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCEEEEE
NKAGAPVPDWIAALPGIGPWLGEQWVKYIGTPGAIGEVIQLVSGANIGNIYRAILAAGNG
CCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCC
AFHLVLTLLFMLIALFFVYRNGAGFTRQIDLVGERILPTRWERISRVVPATISSTVTGMT
HHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LIAIGEGIILGIAYWIAGVPSPVTLGVLTGVMALIPGGAPLSFTLVSIYLVASGSPAHGL
HHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCCE
ALFVWGSVELFIVDKTIRPKLVGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALLV
EEEEECCEEEEEECCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIWREWVREVEISAAVSAELPPPPPTQNDPATEAVSHEDDNDETTAFRKAAF
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
SNIDSRKQNGEPRWLGPASPTRIALIPPISAARWLLLLVVLAGIYFFNGFLVPVLAALV
CCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGFASWPVYTRLLRQVGGNTTLGATIAIILIIAFLVVPIFIAASYTATEIREWFGWAVHV
HHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCEEEEE
NKAGAPVPDWIAALPGIGPWLGEQWVKYIGTPGAIGEVIQLVSGANIGNIYRAILAAGNG
CCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCC
AFHLVLTLLFMLIALFFVYRNGAGFTRQIDLVGERILPTRWERISRVVPATISSTVTGMT
HHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LIAIGEGIILGIAYWIAGVPSPVTLGVLTGVMALIPGGAPLSFTLVSIYLVASGSPAHGL
HHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCCE
ALFVWGSVELFIVDKTIRPKLVGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALLV
EEEEECCEEEEEECCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIWREWVREVEISAAVSAELPPPPPTQNDPATEAVSHEDDNDETTAFRKAAF
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]