Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is fadL [C]
Identifier: 159184884
GI number: 159184884
Start: 1703756
End: 1705033
Strand: Reverse
Name: fadL [C]
Synonym: Atu1717
Alternate gene names: 159184884
Gene position: 1705033-1703756 (Counterclockwise)
Preceding gene: 15889025
Following gene: 15889023
Centisome position: 60.0
GC content: 57.36
Gene sequence:
>1278_bases ATGGCAAAAACTGCAATTTTTCGCGGCGCGGTATGTTTCGCAGTCAGCATCGCGGCGGTAACGCCCTCACTGGCCGGCGG CCTTGAGCGTGGCGGTTACAATATCGACCTGCTGTTCGATCCATCCGATTATGTTCTCGACAGTTCTGCAACCTTCGTAG CGCCGCAGCGCAAGGTGGAGAATGCGCGCGACAATCCGGTTAAAAGTGGTGGTCCGTTACCTGCATCCTGGTCTACCACC GCTGATGATTCCGAAAACTACTGGTCGACACGCGTTGGCGCGAAGGCCGCCATTGGCGACTTCGGCGACTGCATGTTCGA TTATTCGCAGCCTTGGGGGGCGGACCTTAACCCGGGTATATGGCAGGGTTCGAGCTACAATATCGAGACAAAGGTCAAAT CGCACAATTACGCAACGACGTGCCGCGTCAAGTTCGATCTCGGCAAGGGCGACTTCTCGATCATTGGCGGTGGTTTCTAC CAGGAACTCAGTGGCTACAAATATCGTCAGGTCCTGTCGCCAACCTTTTTGACGAGTATTAATGTGCCGACGTCGATCTA CAATGGCACTGGCAAGCTGGATATGGAAGGCGATGGTTGGGGCTGGCGCGCCGGTTTGGCTTACGAGATTCCCGAAATCG CTTTCCGCACGAGCCTTGTGTATAATAGCGCCGTCGATGTTGATCTGACCGGTAACGTCACCCTGACAAACCTGCCGGTT GGCCTAAATCAGATTTCCGGCCGTGTCACGCCTGTTTACGGTAACGTCTCCATGCCTGACAGCATCGAGTGGAAGGTGCA GTCTGGTATTGCGCCCGGCTGGCTCGCCTTCGGCTCGGTGAAGTGGACCGACTGGAGCCAGATCCAGACCATTCCCTTCT GCGCCGTTGGTTCGCCGACCTGCGTGGCGGGAACGCAAAGTGCAATCAACACGCTCGACCTTTTCTATCGGGATGGCTGG ACCATTTCCGGCGGTATCGGCCACAAGTTCAATGAGCAGTGGAGCGGCGCCGTCAGCCTGACATGGGATCGCGGCACATC GACCGTCATCGGGACACAGACGGATACCTGGATGGTTGGCACACAGCTAGTCTATTCGCCCAACAAGAACCTCGAGTTCA AGATTGCCGGCGCACTCGGCCTTCTGACCTCGGGCAGTTCGTCTATCGGTGGCGCCCCGTGCGGCCCGCTTGGTGCACGT TGCGGTGACGAGGCCGGTTACACCTTCGGCAACGACCTCGTGGCAGCGATCTCTACCGGTGTGAAGGTCAAGTTCTGA
Upstream 100 bases:
>100_bases GGAGAAGTGTCGCAGAACTGTGCCAGTGTGCGGCAGATTGTCATTTGCCGCGAAGCACTTCACTCTTTTGATGATCACAT TGCCTTGATTGGGGAGAGAG
Downstream 100 bases:
>100_bases TCCCATCCTTTCGCTTGTTCTAAAATAAAGGTCCGGTTTACCAACCGGGCCTTTTTTCATGCGCGACTATGATTCCTGCT CGATAAAAATTTCCAGCCCG
Product: long-chain fatty acid transport protein
Products: NA
Alternate protein names: Long-Chain Fatty Acid Transporter; Long-Chain Fatty Acid ABC Transporter; Outer Membrane Transporter Ompp1/Fadl/dx Family; Outer Membrane Transporter; Outer Membrane Transporter Family Protein; Aromatic Hydrocarbon Degradation Membrane Protein; Long-Chain Fatty Acid Protein; Transport Of Long-Chain Fatty Acids; OmpP1/FadL/dX Family Outer Membrane Transporter; Fatty Acid Transport System Membrane Protein
Number of amino acids: Translated: 425; Mature: 424
Protein sequence:
>425_residues MAKTAIFRGAVCFAVSIAAVTPSLAGGLERGGYNIDLLFDPSDYVLDSSATFVAPQRKVENARDNPVKSGGPLPASWSTT ADDSENYWSTRVGAKAAIGDFGDCMFDYSQPWGADLNPGIWQGSSYNIETKVKSHNYATTCRVKFDLGKGDFSIIGGGFY QELSGYKYRQVLSPTFLTSINVPTSIYNGTGKLDMEGDGWGWRAGLAYEIPEIAFRTSLVYNSAVDVDLTGNVTLTNLPV GLNQISGRVTPVYGNVSMPDSIEWKVQSGIAPGWLAFGSVKWTDWSQIQTIPFCAVGSPTCVAGTQSAINTLDLFYRDGW TISGGIGHKFNEQWSGAVSLTWDRGTSTVIGTQTDTWMVGTQLVYSPNKNLEFKIAGALGLLTSGSSSIGGAPCGPLGAR CGDEAGYTFGNDLVAAISTGVKVKF
Sequences:
>Translated_425_residues MAKTAIFRGAVCFAVSIAAVTPSLAGGLERGGYNIDLLFDPSDYVLDSSATFVAPQRKVENARDNPVKSGGPLPASWSTT ADDSENYWSTRVGAKAAIGDFGDCMFDYSQPWGADLNPGIWQGSSYNIETKVKSHNYATTCRVKFDLGKGDFSIIGGGFY QELSGYKYRQVLSPTFLTSINVPTSIYNGTGKLDMEGDGWGWRAGLAYEIPEIAFRTSLVYNSAVDVDLTGNVTLTNLPV GLNQISGRVTPVYGNVSMPDSIEWKVQSGIAPGWLAFGSVKWTDWSQIQTIPFCAVGSPTCVAGTQSAINTLDLFYRDGW TISGGIGHKFNEQWSGAVSLTWDRGTSTVIGTQTDTWMVGTQLVYSPNKNLEFKIAGALGLLTSGSSSIGGAPCGPLGAR CGDEAGYTFGNDLVAAISTGVKVKF >Mature_424_residues AKTAIFRGAVCFAVSIAAVTPSLAGGLERGGYNIDLLFDPSDYVLDSSATFVAPQRKVENARDNPVKSGGPLPASWSTTA DDSENYWSTRVGAKAAIGDFGDCMFDYSQPWGADLNPGIWQGSSYNIETKVKSHNYATTCRVKFDLGKGDFSIIGGGFYQ ELSGYKYRQVLSPTFLTSINVPTSIYNGTGKLDMEGDGWGWRAGLAYEIPEIAFRTSLVYNSAVDVDLTGNVTLTNLPVG LNQISGRVTPVYGNVSMPDSIEWKVQSGIAPGWLAFGSVKWTDWSQIQTIPFCAVGSPTCVAGTQSAINTLDLFYRDGWT ISGGIGHKFNEQWSGAVSLTWDRGTSTVIGTQTDTWMVGTQLVYSPNKNLEFKIAGALGLLTSGSSSIGGAPCGPLGARC GDEAGYTFGNDLVAAISTGVKVKF
Specific function: Involved In Translocation Of Long-Chain Fatty Acids Across The Outer Membrane. It Is A Receptor For The Bacteriophage T2. FADl May Form A Specific Channel. [C]
COG id: COG2067
COG function: function code I; Long-chain fatty acid transport protein
Gene ontology:
Cell location: Integral Membrane Protein. Outer Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45294; Mature: 45163
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKTAIFRGAVCFAVSIAAVTPSLAGGLERGGYNIDLLFDPSDYVLDSSATFVAPQRKVE CCCCHHHHCHHHHEEEHHHHCCHHHCCHHCCCEEEEEEECCCCCEECCCCEEECCHHHHC NARDNPVKSGGPLPASWSTTADDSENYWSTRVGAKAAIGDFGDCMFDYSQPWGADLNPGI CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHCCCCHHHHEECCCCCCCCCCCCE WQGSSYNIETKVKSHNYATTCRVKFDLGKGDFSIIGGGFYQELSGYKYRQVLSPTFLTSI ECCCCCEEEEEEECCCCEEEEEEEEEECCCCEEEECCHHHHHHCCCEEHHHCCCHHEEEE NVPTSIYNGTGKLDMEGDGWGWRAGLAYEIPEIAFRTSLVYNSAVDVDLTGNVTLTNLPV CCCCEEECCCCEEEECCCCCEEECCCEECCCHHHHEEEEEECCEEEEEECCCEEEEECCC GLNQISGRVTPVYGNVSMPDSIEWKVQSGIAPGWLAFGSVKWTDWSQIQTIPFCAVGSPT CHHHHCCEEEEEECCCCCCCCEEEEEECCCCCCEEEECCEEECCHHHEEEEEEEECCCCC CVAGTQSAINTLDLFYRDGWTISGGIGHKFNEQWSGAVSLTWDRGTSTVIGTQTDTWMVG EECCCHHHHHHEEEEEECCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEECCCCEEEEE TQLVYSPNKNLEFKIAGALGLLTSGSSSIGGAPCGPLGARCGDEAGYTFGNDLVAAISTG EEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC VKVKF EEEEC >Mature Secondary Structure AKTAIFRGAVCFAVSIAAVTPSLAGGLERGGYNIDLLFDPSDYVLDSSATFVAPQRKVE CCCHHHHCHHHHEEEHHHHCCHHHCCHHCCCEEEEEEECCCCCEECCCCEEECCHHHHC NARDNPVKSGGPLPASWSTTADDSENYWSTRVGAKAAIGDFGDCMFDYSQPWGADLNPGI CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHCCCCHHHHEECCCCCCCCCCCCE WQGSSYNIETKVKSHNYATTCRVKFDLGKGDFSIIGGGFYQELSGYKYRQVLSPTFLTSI ECCCCCEEEEEEECCCCEEEEEEEEEECCCCEEEECCHHHHHHCCCEEHHHCCCHHEEEE NVPTSIYNGTGKLDMEGDGWGWRAGLAYEIPEIAFRTSLVYNSAVDVDLTGNVTLTNLPV CCCCEEECCCCEEEECCCCCEEECCCEECCCHHHHEEEEEECCEEEEEECCCEEEEECCC GLNQISGRVTPVYGNVSMPDSIEWKVQSGIAPGWLAFGSVKWTDWSQIQTIPFCAVGSPT CHHHHCCEEEEEECCCCCCCCEEEEEECCCCCCEEEECCEEECCHHHEEEEEEEECCCCC CVAGTQSAINTLDLFYRDGWTISGGIGHKFNEQWSGAVSLTWDRGTSTVIGTQTDTWMVG EECCCHHHHHHEEEEEECCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEECCCCEEEEE TQLVYSPNKNLEFKIAGALGLLTSGSSSIGGAPCGPLGARCGDEAGYTFGNDLVAAISTG EEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC VKVKF EEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA