Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is maeB [H]
Identifier: 159184856
GI number: 159184856
Start: 1635918
End: 1638233
Strand: Direct
Name: maeB [H]
Synonym: Atu1652
Alternate gene names: 159184856
Gene position: 1635918-1638233 (Clockwise)
Preceding gene: 15888958
Following gene: 159184857
Centisome position: 57.57
GC content: 62.31
Gene sequence:
>2316_bases ATGACCTCTCACGATAAGAACAACACGCCCGCCAACACGGCAAAGGCCGACATCGAGGAACAGGCGCTCTTTTTCCACCG CTACCCACGCCCCGGCAAGCTGGAAATCCAGGCCACCAAGCCACTCGGCAACCAGCGGGATCTGGCGCTTGCCTATTCGC CGGGTGTTGCCGCCCCCTGCCTCGCCATCCATGAGAACCCGGAAATGGCAGCGGAATATACCGCGCGCGCCAATCTCGTC GCCGTCATCTCAAACGGCACGGCGGTGCTCGGCCTCGGCAATATCGGTCCGCTCGCTTCCAAGCCTGTTATGGAAGGCAA GGCCGTCCTCTTCAAGAAATTCGCCGGTATCGACGTGTTCGATATCGAGATCGATGCGCCCGGCATCAACGACATGGTCT CCACCATCGCCGCGCTGGAACCCACCTTCGGCGGCATCAACCTTGAGGATATCAAGGCGCCGGAATGTTTCGAGGTGGAA CGCCAGCTGCGCGAAAAGATGAACATCCCGGTCTTCCACGATGACCAGCACGGCACGGCGATCATCGTCGCCGCCGCCGT CACCAACGCGCTGGAACTGGCCGGAAAATCGCTCTCGAGCGTCAAGATCGTTGCGTCCGGTGCCGGTGCGGCAGCGCTTG CCTGCCTCAACCTGCTGGTCGCCATGGGTGCAAACAAGGAAAACATCTGGGTCCACGATATCGAAGGCCTCGTTTATGAA GGCCGCAACACGCTGATGGACGAGTGGAAAGAAGTTTACGCCCAGAAGACAGACAAGCGTGTGCTGGCGGATTCGATCGA CGGTGCCGATGTCTTCCTCGGCCTTTCCGCCGCGGGCGTGCTGAAGCCGGAACTCTTGGAGCGCATGGCGGAAAATCCGC TGATTCTCGCGCTTGCCAACCCCAATCCCGAAATCATGCCGGAGGCTGCCCGTGCCGCCCGCCCGGATGCGATGATTTGC ACCGGCCGTTCGGATTTCCCGAACCAGGTCAACAATGTTCTCTGCTTCCCCTACATCTTCCGCGGCGCGCTGGATTGCGG CGCAACCACGATCAACGAGGAAATGAAGATGGCCGCCGTGCAGGCCATTGCAGAGCTTGCCCGCGAGGAAGTCTCGGAAG TCGCCGCCAGAGCCTATAGCGGCGAAACGCCGATCTTTGGCCCGAACTATCTCATTCCCTCGCCGTTCGATCCGCGCCTC ATCCTGCGCATTGCACCCGCCGTTGCCCGCGCTGCGGCGGCAAGCGGCGTGGCCACCCGGCCGATCACCGATTTCGAGGC CTATTTCGACCAGCTGAACCGTTTCGTCTGGCGCTCCGGCTTCATCATGAAGCCGGTCTTCAATGCCGCCAAGGCGGCCG AAAAGAAGCGCATCATCTTTGCCGAAGGCGAAGACGAGCGCGTGCTGCGCGCCGCCCAGGTGCTTTTGGAAGAAGGCACC GGCGTCCCGATCCTCATCGGTCGCCCGCAGATCATCGAAACGCGCCTGAAGCGCTTCGGCCTGCGCATCCGCCCGCATGC GGATTTCGCCGTGGTCAACCCGGAAGACGATCCGCGCTACCGCGAATATGTGGATGATTATTTCGCCCTCGTCGGTCGCG CCGGCATCAACCCGGAAGCCGCCCGCACCATCGTGCGTACCAACTCCACCGTCATCGGTGCGCTGTCGGTGAAGCGTGGC GAAGCGGATGCGCTGATCTGTGGTCTGGAAGGCCGTTATGACCGCCATCTGCGCGACGTGAACCAGATCATCGGCAAGCA GGAAAGTGTGCGCTCCTTTGCGGGCCTCAGCCTTCTCATTACCCAGCAGGGCGCCCTGTTCCTGACCGATACCTTCGTCA ACAACGACCCGACGTCAGAAGAAGTGGCCGAGATGGCGATCCTTGCGGCGAAGGAAATCCGTCGTTTCGGCATTACGCCG AAGATCGCGCTCGCCAGCCATTCCAACTTCGGATCGCGTGACTCGGAAAGCGCCCGCAAGATGCGCCGCGCACTGAAGAT CATCCAGCAGGCAGCGCCAGAACTGGAAGTGGATGGTGAGATGCAGGGCGGCTCGGCACTCTCCGAAGCGCTGCGCAAGC GTGCCATGCCCAACAGCGTGCTGACCGGCGAGGCGAACCTTCTGGTCTTCCCGAACCTCGATGCCGCCAATATCACGCTC GGTGTCACTCGCACGCTGACGGAAGGCCTGCATGTCGGCCCGATCCTGCTCGGCACGGCCCTGCCCGCCCACATCCTGTC GCCCAGCGTCACCTCGCGCGGCGTCGTCAACATGGCGGCCTTTGCCGTGGTGCAGGCCTCGCACCCTTCGGTGTGA
Upstream 100 bases:
>100_bases GCCTGCATTTGCATGAGAAGGCGGTAAATAACGGCTGTACCCTGGGGAAGTTTGTTGTATTCAGGGGGCCGGAATTGAAC CAGATATGACGGTGGAAGAC
Downstream 100 bases:
>100_bases TGAAGGCGCATTAACGCAGTTTTGAACATGCTGTTGCCGCAATGCGGCAACAGCATATGTTATCTTCCCGAAACACGGAT TTCCTGAAGCGTAACACCCC
Product: malic enzyme
Products: NA
Alternate protein names: NAD-ME [H]
Number of amino acids: Translated: 771; Mature: 770
Protein sequence:
>771_residues MTSHDKNNTPANTAKADIEEQALFFHRYPRPGKLEIQATKPLGNQRDLALAYSPGVAAPCLAIHENPEMAAEYTARANLV AVISNGTAVLGLGNIGPLASKPVMEGKAVLFKKFAGIDVFDIEIDAPGINDMVSTIAALEPTFGGINLEDIKAPECFEVE RQLREKMNIPVFHDDQHGTAIIVAAAVTNALELAGKSLSSVKIVASGAGAAALACLNLLVAMGANKENIWVHDIEGLVYE GRNTLMDEWKEVYAQKTDKRVLADSIDGADVFLGLSAAGVLKPELLERMAENPLILALANPNPEIMPEAARAARPDAMIC TGRSDFPNQVNNVLCFPYIFRGALDCGATTINEEMKMAAVQAIAELAREEVSEVAARAYSGETPIFGPNYLIPSPFDPRL ILRIAPAVARAAAASGVATRPITDFEAYFDQLNRFVWRSGFIMKPVFNAAKAAEKKRIIFAEGEDERVLRAAQVLLEEGT GVPILIGRPQIIETRLKRFGLRIRPHADFAVVNPEDDPRYREYVDDYFALVGRAGINPEAARTIVRTNSTVIGALSVKRG EADALICGLEGRYDRHLRDVNQIIGKQESVRSFAGLSLLITQQGALFLTDTFVNNDPTSEEVAEMAILAAKEIRRFGITP KIALASHSNFGSRDSESARKMRRALKIIQQAAPELEVDGEMQGGSALSEALRKRAMPNSVLTGEANLLVFPNLDAANITL GVTRTLTEGLHVGPILLGTALPAHILSPSVTSRGVVNMAAFAVVQASHPSV
Sequences:
>Translated_771_residues MTSHDKNNTPANTAKADIEEQALFFHRYPRPGKLEIQATKPLGNQRDLALAYSPGVAAPCLAIHENPEMAAEYTARANLV AVISNGTAVLGLGNIGPLASKPVMEGKAVLFKKFAGIDVFDIEIDAPGINDMVSTIAALEPTFGGINLEDIKAPECFEVE RQLREKMNIPVFHDDQHGTAIIVAAAVTNALELAGKSLSSVKIVASGAGAAALACLNLLVAMGANKENIWVHDIEGLVYE GRNTLMDEWKEVYAQKTDKRVLADSIDGADVFLGLSAAGVLKPELLERMAENPLILALANPNPEIMPEAARAARPDAMIC TGRSDFPNQVNNVLCFPYIFRGALDCGATTINEEMKMAAVQAIAELAREEVSEVAARAYSGETPIFGPNYLIPSPFDPRL ILRIAPAVARAAAASGVATRPITDFEAYFDQLNRFVWRSGFIMKPVFNAAKAAEKKRIIFAEGEDERVLRAAQVLLEEGT GVPILIGRPQIIETRLKRFGLRIRPHADFAVVNPEDDPRYREYVDDYFALVGRAGINPEAARTIVRTNSTVIGALSVKRG EADALICGLEGRYDRHLRDVNQIIGKQESVRSFAGLSLLITQQGALFLTDTFVNNDPTSEEVAEMAILAAKEIRRFGITP KIALASHSNFGSRDSESARKMRRALKIIQQAAPELEVDGEMQGGSALSEALRKRAMPNSVLTGEANLLVFPNLDAANITL GVTRTLTEGLHVGPILLGTALPAHILSPSVTSRGVVNMAAFAVVQASHPSV >Mature_770_residues TSHDKNNTPANTAKADIEEQALFFHRYPRPGKLEIQATKPLGNQRDLALAYSPGVAAPCLAIHENPEMAAEYTARANLVA VISNGTAVLGLGNIGPLASKPVMEGKAVLFKKFAGIDVFDIEIDAPGINDMVSTIAALEPTFGGINLEDIKAPECFEVER QLREKMNIPVFHDDQHGTAIIVAAAVTNALELAGKSLSSVKIVASGAGAAALACLNLLVAMGANKENIWVHDIEGLVYEG RNTLMDEWKEVYAQKTDKRVLADSIDGADVFLGLSAAGVLKPELLERMAENPLILALANPNPEIMPEAARAARPDAMICT GRSDFPNQVNNVLCFPYIFRGALDCGATTINEEMKMAAVQAIAELAREEVSEVAARAYSGETPIFGPNYLIPSPFDPRLI LRIAPAVARAAAASGVATRPITDFEAYFDQLNRFVWRSGFIMKPVFNAAKAAEKKRIIFAEGEDERVLRAAQVLLEEGTG VPILIGRPQIIETRLKRFGLRIRPHADFAVVNPEDDPRYREYVDDYFALVGRAGINPEAARTIVRTNSTVIGALSVKRGE ADALICGLEGRYDRHLRDVNQIIGKQESVRSFAGLSLLITQQGALFLTDTFVNNDPTSEEVAEMAILAAKEIRRFGITPK IALASHSNFGSRDSESARKMRRALKIIQQAAPELEVDGEMQGGSALSEALRKRAMPNSVLTGEANLLVFPNLDAANITLG VTRTLTEGLHVGPILLGTALPAHILSPSVTSRGVVNMAAFAVVQASHPSV
Specific function: Required for symbiotic nitrogen fixation. Plays a key role in the conversion of malate to acetyl-CoA for efficient tricarboxylic acid cycle function in nitrogen-fixating bacteria [H]
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family [H]
Homologues:
Organism=Homo sapiens, GI4505145, Length=354, Percent_Identity=25.7062146892655, Blast_Score=83, Evalue=9e-16, Organism=Homo sapiens, GI62420882, Length=410, Percent_Identity=25.1219512195122, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI62420880, Length=410, Percent_Identity=25.1219512195122, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI239049447, Length=410, Percent_Identity=25.1219512195122, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI4505143, Length=398, Percent_Identity=23.1155778894472, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI270265879, Length=318, Percent_Identity=26.4150943396226, Blast_Score=75, Evalue=2e-13, Organism=Escherichia coli, GI1788806, Length=752, Percent_Identity=57.7127659574468, Blast_Score=897, Evalue=0.0, Organism=Escherichia coli, GI1788800, Length=313, Percent_Identity=30.9904153354633, Blast_Score=132, Evalue=1e-31, Organism=Escherichia coli, GI1788635, Length=314, Percent_Identity=28.0254777070064, Blast_Score=125, Evalue=8e-30, Organism=Escherichia coli, GI87081919, Length=317, Percent_Identity=24.9211356466877, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17537199, Length=411, Percent_Identity=24.5742092457421, Blast_Score=67, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322823, Length=239, Percent_Identity=30.1255230125523, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI21356279, Length=401, Percent_Identity=25.1870324189526, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI281362672, Length=401, Percent_Identity=25.1870324189526, Blast_Score=74, Evalue=5e-13, Organism=Drosophila melanogaster, GI281362674, Length=401, Percent_Identity=25.1870324189526, Blast_Score=74, Evalue=5e-13, Organism=Drosophila melanogaster, GI24646388, Length=400, Percent_Identity=25.75, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI24646386, Length=400, Percent_Identity=25.75, Blast_Score=72, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR012188 - InterPro: IPR016040 - InterPro: IPR002505 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M; PF01515 PTA_PTB [H]
EC number: =1.1.1.39 [H]
Molecular weight: Translated: 83100; Mature: 82969
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSHDKNNTPANTAKADIEEQALFFHRYPRPGKLEIQATKPLGNQRDLALAYSPGVAAPC CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCE LAIHENPEMAAEYTARANLVAVISNGTAVLGLGNIGPLASKPVMEGKAVLFKKFAGIDVF EEECCCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEE DIEIDAPGINDMVSTIAALEPTFGGINLEDIKAPECFEVERQLREKMNIPVFHDDQHGTA EEEECCCCHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEECCCCCCE IIVAAAVTNALELAGKSLSSVKIVASGAGAAALACLNLLVAMGANKENIWVHDIEGLVYE EEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCEEEC GRNTLMDEWKEVYAQKTDKRVLADSIDGADVFLGLSAAGVLKPELLERMAENPLILALAN CCHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHCCCCEEEEECC PNPEIMPEAARAARPDAMICTGRSDFPNQVNNVLCFPYIFRGALDCGATTINEEMKMAAV CCCCCCCHHHHHCCCCCEEEECCCCCCHHHHCEEEHHHHHHHHHHCCCHHHHHHHHHHHH QAIAELAREEVSEVAARAYSGETPIFGPNYLIPSPFDPRLILRIAPAVARAAAASGVATR HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCC PITDFEAYFDQLNRFVWRSGFIMKPVFNAAKAAEKKRIIFAEGEDERVLRAAQVLLEEGT CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCC GVPILIGRPQIIETRLKRFGLRIRPHADFAVVNPEDDPRYREYVDDYFALVGRAGINPEA CCEEEECCCHHHHHHHHHCCCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHH ARTIVRTNSTVIGALSVKRGEADALICGLEGRYDRHLRDVNQIIGKQESVRSFAGLSLLI HHEEEECCCEEEEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHCCEEEEE TQQGALFLTDTFVNNDPTSEEVAEMAILAAKEIRRFGITPKIALASHSNFGSRDSESARK ECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH MRRALKIIQQAAPELEVDGEMQGGSALSEALRKRAMPNSVLTGEANLLVFPNLDAANITL HHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHCCCCCEEECCCCEEEECCCCCCCEEE GVTRTLTEGLHVGPILLGTALPAHILSPSVTSRGVVNMAAFAVVQASHPSV EEHHHHHCCCCCCHHHHHHHCHHHHCCCCCCCCCHHHHHHHHEEECCCCCC >Mature Secondary Structure TSHDKNNTPANTAKADIEEQALFFHRYPRPGKLEIQATKPLGNQRDLALAYSPGVAAPC CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCE LAIHENPEMAAEYTARANLVAVISNGTAVLGLGNIGPLASKPVMEGKAVLFKKFAGIDVF EEECCCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEE DIEIDAPGINDMVSTIAALEPTFGGINLEDIKAPECFEVERQLREKMNIPVFHDDQHGTA EEEECCCCHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEECCCCCCE IIVAAAVTNALELAGKSLSSVKIVASGAGAAALACLNLLVAMGANKENIWVHDIEGLVYE EEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCEEEC GRNTLMDEWKEVYAQKTDKRVLADSIDGADVFLGLSAAGVLKPELLERMAENPLILALAN CCHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHCCCCEEEEECC PNPEIMPEAARAARPDAMICTGRSDFPNQVNNVLCFPYIFRGALDCGATTINEEMKMAAV CCCCCCCHHHHHCCCCCEEEECCCCCCHHHHCEEEHHHHHHHHHHCCCHHHHHHHHHHHH QAIAELAREEVSEVAARAYSGETPIFGPNYLIPSPFDPRLILRIAPAVARAAAASGVATR HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCC PITDFEAYFDQLNRFVWRSGFIMKPVFNAAKAAEKKRIIFAEGEDERVLRAAQVLLEEGT CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCC GVPILIGRPQIIETRLKRFGLRIRPHADFAVVNPEDDPRYREYVDDYFALVGRAGINPEA CCEEEECCCHHHHHHHHHCCCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHH ARTIVRTNSTVIGALSVKRGEADALICGLEGRYDRHLRDVNQIIGKQESVRSFAGLSLLI HHEEEECCCEEEEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHCCEEEEE TQQGALFLTDTFVNNDPTSEEVAEMAILAAKEIRRFGITPKIALASHSNFGSRDSESARK ECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH MRRALKIIQQAAPELEVDGEMQGGSALSEALRKRAMPNSVLTGEANLLVFPNLDAANITL HHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHCCCCCEEECCCCEEEECCCCCCCEEE GVTRTLTEGLHVGPILLGTALPAHILSPSVTSRGVVNMAAFAVVQASHPSV EEHHHHHCCCCCCHHHHHHHCHHHHCCCCCCCCCHHHHHHHHEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9535928; 11481430; 10407149 [H]