| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
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The map label for this gene is secD [H]
Identifier: 159184815
GI number: 159184815
Start: 1548369
End: 1550942
Strand: Reverse
Name: secD [H]
Synonym: Atu1562
Alternate gene names: 159184815
Gene position: 1550942-1548369 (Counterclockwise)
Preceding gene: 15888882
Following gene: 15888880
Centisome position: 54.58
GC content: 59.29
Gene sequence:
>2574_bases ATGCTTCATTTTTCCCGTTGGAAAACAGTCTTCATCTGGCTGCTTGTGCTGGCAAGCGTCTTCATCGCCTCTCCCAACCT GTTTTCGGAAAAACAGCTGGAGAGCATGCCTGCCTGGTACAAGGACAACAAGGTAACGCTCGGTCTCGACCTTCAGGGCG GCTCGCACATCATGCTCAAGATCGAGCGTTCCGACATCGTCAAGGAACGGCTTGAGACGATCGTCGGCGATGTGCGCACA CAGCTTCGCGACGCCAACATCCGCTATTCGGGGCTCACCGGTAACGGCCAGCAAATTCAGGTTCGCATCAGCGATCCCGC GCAGATGGAAGCCGCCAAGACCGCACTTCGTGATCTGACGCAGCCGGTGTCTGCCGGAACGCTGGTCGGCGGTTCCATTA CAGAAGTGACGATGAATGACGGCGGCGACAGTCTGCTGCGCCTCAACCTGACGGATGAGGGCATCGATTACCGTCTGTCA TCGGCCGTTTCGCAGTCGATCGAAGTCGTGCGCCGCCGCGTTGACGAAGTCGGCACGACCGAGCCGCTCATCCAGCGGCA GGGTTCCGACCGCATCATCGTGCAGGTGCCGGGTCTTCAGGATCCGCAGCGCCTGAAATCGCTCCTCAACCAGACTGCAA AGCTGTCCTTCCGCATGGTAGACACGACCATGCCGGCGCAGGACGCCATGAACGGCCGTCCGCCCGCAACCTCGGAAGTT CTCTACTCGCAGGACGATCCGCCGGTTCCCTATCTGGTGGAGCGTCGCGCACTCGTGTCCGGCGACAATCTCGTCGATGC ACAGGCAAGCTTCAACCAGCAGACCAACGAACCCGTCGTCACCTTCCGCTTCGACAGCCGCGGCGCGCAGCGCTTTGCGC AGGCGACACAGCAGAATGTCGGCAAGCCTTTCGCCATTGTGCTCGACAATCAGGTTATTTCCGCGCCTGTCATCCGCGAG CCCATCATCGGCGGTTCGGGACAGATTTCCGGTAGTTTCTCGGTGCAGGGTGCGAATGATCTCGCGGTTCTGCTGCGAGC CGGTGCACTGCCGGCCACGCTAACGGTCGTTGAAGAACGCACCGTCGGTCCGAGCCTCGGTAACGACTCCATCACCGCGG GCCTTACGGCCAGCGCCATCGGCGCCGTTGGCGTCCTCATCTTCATGTTCGTCTTCTACGGCTTCTTCGGCCTGCTGGCG AATATCGCGCTTATCGTCAACGTCGTAATGTTGATCGCGGTGTTGAGCGTCATCGGGTCAACGCTCACCTTGCCCGGTAT CGCCGGTATCGTCTTGACGATCGGTATGGCGGTGGATTCCAACGTTCTGATCTATGAGCGAATACGCGAAGAGGTGAAGA GCGGCAAACCGCTGATCCAGGCGCTGGATAATGGTTTTACACGCGCCTTTGCGACCATCATCGACGCCAACCTGACGACG CTGATCGTGGCGAGCGTGCTGTTCTACATGGGCACTGGTCCGGTCAAGGGCTTCGCCGTCACGCTTGCGGTCGGTATCAT TACCACCGTGTTCACGGCCTATACGCTGACGGCCTGGATGTTCGGCTACTGGGTTCGCCGCAGCCGTCCGAAACATCTGC CGAAGGGTGTACGCACGGCCATGTTCGATGGTCGCGATATTCCCTTCATGCGTTATCGCCGCGTGGTTTTCATGATCACC GGTGTGATCATGCTCGCCTGCGTCGGCGGTTTCGTCGCCAAGGGTCTGAACCTCGGCATCGATTTCCAGGGTGGCTCGGT CATCGAAGTGCGCGCCAAGCAGGGTGAGGCAGATCTTGCTGACATCCGCGAGCGTCTGAACCAGCTCAACCTCGGTGAAA TCCAGGCTCAGAACTTCGGCTCGCCGCAGGATGTGCTCATCCGCATTCAGGCGCAGGACGGCGGCGAAAATGCCGAGCAG TCGGCCATCACGCTGGTTCGCGGCGAACTTGAGGACAAATACGACTTCCGTCGCGTGGAAGTCGTTGGTCCGGCCGTCTC CGGTGACCTGACCGTTACTTCCACGATCGGTGTCCTGCTCGCCATGGCGGCGATCATGGTCTACATCTGGGTTCGCTTCG AGTGGCAGTTTGCACTCGGTGCGGTCATCTCGATGGTGCATGACGTGGTCTTCACCATCGGCCTTTTCGTCTTCCTGGGT ATAGAGTTCAACCTGACCAGTATCGCGGCGATCCTGACGATCATCGGTTATTCGCTGAACGACACTGTCGTCATCTACGA CCGTGTCCGTGAAAACCTCCGGCGATACAAGAAGATGCCGCTTTCGATGATCATCGACGTATCGCTGAACCAGACCCTGT CGCGCACGATCCTTACCGGCCTGACCGTGCTTCTGGCACTGCTGGCACTGTATCTCTTCGGTGGCGAGGTCATCCGTTCC TTCACCTTCGCCATGTTGTTCGGCGTCGGTATCGGCGTGTTCTCCTCGGTCTATATCGCGGCTCCGGTGCTGATCGCCTT CAAGCTGCGTCCTGACAGCAAGGATGCGGAAGACGAAAAGGACGACAAGAAAGAAAACAACACCGGCGCCATTGGCGGCA AGCCTGCCGTCTGA
Upstream 100 bases:
>100_bases ACGGAAGCCGCTTCCTGATCCTGCCGGACAACCGGATGCCCGATTGCGAATTTTGACGGGTTGCGCTGTCCGTGCAACCC CAACCCTGACCGAGATCGAA
Downstream 100 bases:
>100_bases TGGCCGGCGGGATCGAAATACGCCCGGCCCACTTTCCCGGCCGGGCGCCCCTCGATGCTTATGGCAATGGCGGCTTCCGC TTTGCCGACATGTCGCATCG
Product: bifunctional preprotein translocase subunit SecD/SecF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 857; Mature: 857
Protein sequence:
>857_residues MLHFSRWKTVFIWLLVLASVFIASPNLFSEKQLESMPAWYKDNKVTLGLDLQGGSHIMLKIERSDIVKERLETIVGDVRT QLRDANIRYSGLTGNGQQIQVRISDPAQMEAAKTALRDLTQPVSAGTLVGGSITEVTMNDGGDSLLRLNLTDEGIDYRLS SAVSQSIEVVRRRVDEVGTTEPLIQRQGSDRIIVQVPGLQDPQRLKSLLNQTAKLSFRMVDTTMPAQDAMNGRPPATSEV LYSQDDPPVPYLVERRALVSGDNLVDAQASFNQQTNEPVVTFRFDSRGAQRFAQATQQNVGKPFAIVLDNQVISAPVIRE PIIGGSGQISGSFSVQGANDLAVLLRAGALPATLTVVEERTVGPSLGNDSITAGLTASAIGAVGVLIFMFVFYGFFGLLA NIALIVNVVMLIAVLSVIGSTLTLPGIAGIVLTIGMAVDSNVLIYERIREEVKSGKPLIQALDNGFTRAFATIIDANLTT LIVASVLFYMGTGPVKGFAVTLAVGIITTVFTAYTLTAWMFGYWVRRSRPKHLPKGVRTAMFDGRDIPFMRYRRVVFMIT GVIMLACVGGFVAKGLNLGIDFQGGSVIEVRAKQGEADLADIRERLNQLNLGEIQAQNFGSPQDVLIRIQAQDGGENAEQ SAITLVRGELEDKYDFRRVEVVGPAVSGDLTVTSTIGVLLAMAAIMVYIWVRFEWQFALGAVISMVHDVVFTIGLFVFLG IEFNLTSIAAILTIIGYSLNDTVVIYDRVRENLRRYKKMPLSMIIDVSLNQTLSRTILTGLTVLLALLALYLFGGEVIRS FTFAMLFGVGIGVFSSVYIAAPVLIAFKLRPDSKDAEDEKDDKKENNTGAIGGKPAV
Sequences:
>Translated_857_residues MLHFSRWKTVFIWLLVLASVFIASPNLFSEKQLESMPAWYKDNKVTLGLDLQGGSHIMLKIERSDIVKERLETIVGDVRT QLRDANIRYSGLTGNGQQIQVRISDPAQMEAAKTALRDLTQPVSAGTLVGGSITEVTMNDGGDSLLRLNLTDEGIDYRLS SAVSQSIEVVRRRVDEVGTTEPLIQRQGSDRIIVQVPGLQDPQRLKSLLNQTAKLSFRMVDTTMPAQDAMNGRPPATSEV LYSQDDPPVPYLVERRALVSGDNLVDAQASFNQQTNEPVVTFRFDSRGAQRFAQATQQNVGKPFAIVLDNQVISAPVIRE PIIGGSGQISGSFSVQGANDLAVLLRAGALPATLTVVEERTVGPSLGNDSITAGLTASAIGAVGVLIFMFVFYGFFGLLA NIALIVNVVMLIAVLSVIGSTLTLPGIAGIVLTIGMAVDSNVLIYERIREEVKSGKPLIQALDNGFTRAFATIIDANLTT LIVASVLFYMGTGPVKGFAVTLAVGIITTVFTAYTLTAWMFGYWVRRSRPKHLPKGVRTAMFDGRDIPFMRYRRVVFMIT GVIMLACVGGFVAKGLNLGIDFQGGSVIEVRAKQGEADLADIRERLNQLNLGEIQAQNFGSPQDVLIRIQAQDGGENAEQ SAITLVRGELEDKYDFRRVEVVGPAVSGDLTVTSTIGVLLAMAAIMVYIWVRFEWQFALGAVISMVHDVVFTIGLFVFLG IEFNLTSIAAILTIIGYSLNDTVVIYDRVRENLRRYKKMPLSMIIDVSLNQTLSRTILTGLTVLLALLALYLFGGEVIRS FTFAMLFGVGIGVFSSVYIAAPVLIAFKLRPDSKDAEDEKDDKKENNTGAIGGKPAV >Mature_857_residues MLHFSRWKTVFIWLLVLASVFIASPNLFSEKQLESMPAWYKDNKVTLGLDLQGGSHIMLKIERSDIVKERLETIVGDVRT QLRDANIRYSGLTGNGQQIQVRISDPAQMEAAKTALRDLTQPVSAGTLVGGSITEVTMNDGGDSLLRLNLTDEGIDYRLS SAVSQSIEVVRRRVDEVGTTEPLIQRQGSDRIIVQVPGLQDPQRLKSLLNQTAKLSFRMVDTTMPAQDAMNGRPPATSEV LYSQDDPPVPYLVERRALVSGDNLVDAQASFNQQTNEPVVTFRFDSRGAQRFAQATQQNVGKPFAIVLDNQVISAPVIRE PIIGGSGQISGSFSVQGANDLAVLLRAGALPATLTVVEERTVGPSLGNDSITAGLTASAIGAVGVLIFMFVFYGFFGLLA NIALIVNVVMLIAVLSVIGSTLTLPGIAGIVLTIGMAVDSNVLIYERIREEVKSGKPLIQALDNGFTRAFATIIDANLTT LIVASVLFYMGTGPVKGFAVTLAVGIITTVFTAYTLTAWMFGYWVRRSRPKHLPKGVRTAMFDGRDIPFMRYRRVVFMIT GVIMLACVGGFVAKGLNLGIDFQGGSVIEVRAKQGEADLADIRERLNQLNLGEIQAQNFGSPQDVLIRIQAQDGGENAEQ SAITLVRGELEDKYDFRRVEVVGPAVSGDLTVTSTIGVLLAMAAIMVYIWVRFEWQFALGAVISMVHDVVFTIGLFVFLG IEFNLTSIAAILTIIGYSLNDTVVIYDRVRENLRRYKKMPLSMIIDVSLNQTLSRTILTGLTVLLALLALYLFGGEVIRS FTFAMLFGVGIGVFSSVYIAAPVLIAFKLRPDSKDAEDEKDDKKENNTGAIGGKPAV
Specific function: Involved in protein export [H]
COG id: COG0342
COG function: function code U; Preprotein translocase subunit SecD
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secD/secF family. SecD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786609, Length=523, Percent_Identity=35.3728489483748, Blast_Score=310, Evalue=3e-85, Organism=Escherichia coli, GI1786610, Length=306, Percent_Identity=36.9281045751634, Blast_Score=218, Evalue=2e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005791 - InterPro: IPR022813 - InterPro: IPR022646 - InterPro: IPR022645 - InterPro: IPR005665 [H]
Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]
EC number: NA
Molecular weight: Translated: 93193; Mature: 93193
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: PS50156 SSD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHFSRWKTVFIWLLVLASVFIASPNLFSEKQLESMPAWYKDNKVTLGLDLQGGSHIMLK CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEECCCEEEEEEEECCCCEEEEE IERSDIVKERLETIVGDVRTQLRDANIRYSGLTGNGQQIQVRISDPAQMEAAKTALRDLT ECHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHH QPVSAGTLVGGSITEVTMNDGGDSLLRLNLTDEGIDYRLSSAVSQSIEVVRRRVDEVGTT CCCCCCEEECCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCC EPLIQRQGSDRIIVQVPGLQDPQRLKSLLNQTAKLSFRMVDTTMPAQDAMNGRPPATSEV CHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHEEEEEEECCCCHHHCCCCCCCCCCCC LYSQDDPPVPYLVERRALVSGDNLVDAQASFNQQTNEPVVTFRFDSRGAQRFAQATQQNV EECCCCCCCCHHHHHHHHCCCCCCEECHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHC GKPFAIVLDNQVISAPVIREPIIGGSGQISGSFSVQGANDLAVLLRAGALPATLTVVEER CCCEEEEECCCCCCCCCHHCCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECC TVGPSLGNDSITAGLTASAIGAVGVLIFMFVFYGFFGLLANIALIVNVVMLIAVLSVIGS CCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TLTLPGIAGIVLTIGMAVDSNVLIYERIREEVKSGKPLIQALDNGFTRAFATIIDANLTT HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHCCHHH LIVASVLFYMGTGPVKGFAVTLAVGIITTVFTAYTLTAWMFGYWVRRSRPKHLPKGVRTA HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH MFDGRDIPFMRYRRVVFMITGVIMLACVGGFVAKGLNLGIDFQGGSVIEVRAKQGEADLA HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCCHH DIRERLNQLNLGEIQAQNFGSPQDVLIRIQAQDGGENAEQSAITLVRGELEDKYDFRRVE HHHHHHCCCCCCCEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCEEEE VVGPAVSGDLTVTSTIGVLLAMAAIMVYIWVRFEWQFALGAVISMVHDVVFTIGLFVFLG EECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHC IEFNLTSIAAILTIIGYSLNDTVVIYDRVRENLRRYKKMPLSMIIDVSLNQTLSRTILTG CCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCHHEEEECHHHHHHHHHHHHH LTVLLALLALYLFGGEVIRSFTFAMLFGVGIGVFSSVYIAAPVLIAFKLRPDSKDAEDEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCC DDKKENNTGAIGGKPAV HHCCCCCCCCCCCCCCC >Mature Secondary Structure MLHFSRWKTVFIWLLVLASVFIASPNLFSEKQLESMPAWYKDNKVTLGLDLQGGSHIMLK CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEECCCEEEEEEEECCCCEEEEE IERSDIVKERLETIVGDVRTQLRDANIRYSGLTGNGQQIQVRISDPAQMEAAKTALRDLT ECHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHH QPVSAGTLVGGSITEVTMNDGGDSLLRLNLTDEGIDYRLSSAVSQSIEVVRRRVDEVGTT CCCCCCEEECCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCC EPLIQRQGSDRIIVQVPGLQDPQRLKSLLNQTAKLSFRMVDTTMPAQDAMNGRPPATSEV CHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHEEEEEEECCCCHHHCCCCCCCCCCCC LYSQDDPPVPYLVERRALVSGDNLVDAQASFNQQTNEPVVTFRFDSRGAQRFAQATQQNV EECCCCCCCCHHHHHHHHCCCCCCEECHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHC GKPFAIVLDNQVISAPVIREPIIGGSGQISGSFSVQGANDLAVLLRAGALPATLTVVEER CCCEEEEECCCCCCCCCHHCCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECC TVGPSLGNDSITAGLTASAIGAVGVLIFMFVFYGFFGLLANIALIVNVVMLIAVLSVIGS CCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TLTLPGIAGIVLTIGMAVDSNVLIYERIREEVKSGKPLIQALDNGFTRAFATIIDANLTT HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHCCHHH LIVASVLFYMGTGPVKGFAVTLAVGIITTVFTAYTLTAWMFGYWVRRSRPKHLPKGVRTA HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH MFDGRDIPFMRYRRVVFMITGVIMLACVGGFVAKGLNLGIDFQGGSVIEVRAKQGEADLA HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCCHH DIRERLNQLNLGEIQAQNFGSPQDVLIRIQAQDGGENAEQSAITLVRGELEDKYDFRRVE HHHHHHCCCCCCCEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCEEEE VVGPAVSGDLTVTSTIGVLLAMAAIMVYIWVRFEWQFALGAVISMVHDVVFTIGLFVFLG EECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHC IEFNLTSIAAILTIIGYSLNDTVVIYDRVRENLRRYKKMPLSMIIDVSLNQTLSRTILTG CCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCHHEEEECHHHHHHHHHHHHH LTVLLALLALYLFGGEVIRSFTFAMLFGVGIGVFSSVYIAAPVLIAFKLRPDSKDAEDEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCC DDKKENNTGAIGGKPAV HHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9826342 [H]