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The map label for this gene is tnp [H]

Identifier: 159184777

GI number: 159184777

Start: 1477722

End: 1478723

Strand: Reverse

Name: tnp [H]

Synonym: Atu1488

Alternate gene names: 159184777

Gene position: 1478723-1477722 (Counterclockwise)

Preceding gene: 159184778

Following gene: 159184776

Centisome position: 52.04

GC content: 56.99

Gene sequence:

>1002_bases
ATGTCCCGATGCTATACGCAGATCACCCTTGCCGATCGCCGCCGTCTTCATCATCTGGTGGCGGCAAAGGTTCCCGTTAA
CGAGATGGCGCGTCAGCTTGGCCGTCATCGCTCGACCATTTACCGTGAGATCAAGCGCAACACGTTTCATGACCGTGAAC
TGCCAGATTATGACGGCTACTACAGCACGGTTGCTCACGACATCTCCAGAGACCGTCGACGCCGATTGATAAAGCTGCGG
CGCCATCCGGCTTTGCGCGCCGAGATCATCAACCAGTTGGAGGCCCGCTGGTCTCCGGAACAGATTGCCGGACGTCTGCA
GTCGGACGGCTTCGGTCGTATTCGCGTATGCAAGGAGACAATCTACCGCTTCATCTACAGCAAGGAAGATTACGCGCTTG
GTCTCTATCAGTATCTGCCTGAGGCTCGCCGCAAACGTCGCCCAATGCGTTCGAGGAAGCCGCGCGACGGTGCGTTTCCC
TCTACCCACCGAATATCCGAAAGGCCTGATTTCATTGGAAATAGATCGAAGTTTGGACATTGGGAGGGAGACCTCCTCAT
CTTTGAACGCCCACTCGGCCATGCCAATGTCACCACGCTCGTGGAGCGCAAGAGCCGCTACACCGTTCTTATCAAGAACC
CGAGCCGGCACTCGGGGCCAATCATGGATAAGATCGTCAGAGCGTTTTCGCTGTTGCCGGCATTCGCGCGTCAGAGCTTC
ACATTTGATCGGGGCACCGAGTTTGCCGGGTTCAGGGCTTTGGAGGAAGGGATCGGTGCGTGCAGCTGGTTTTGCGACCC
AAGCGCGCCTTGGCAAAAAGGGACCGTCGAGAATACCAACAAGCGAATTCGACGCTTCCTGCCAGGCAGCACAGACCTGG
CAGTCGTGTCACAGCGCGACCTTCTCCGCCTCACGCGTCATATCAACGATCAACCGCGCAAATGCCTTGGATACAGGACG
CCGGCCGAGGTGTTCATAGCTCATTTGCAAGAAGGAGGGTGA

Upstream 100 bases:

>100_bases
CATAATATATCTTATGCGATTATTGTTTGTAGCTGGGTACATTCTATTTTCAAGTGCGACATGCCAATGATTTCAATGGC
TTCACTTTGGAGATTTTGGC

Downstream 100 bases:

>100_bases
TCCCCTACCCTAAAGCGCAGGCATGGTGCACTTGGGTTAGCTTCTCCAATAGATTGCATCTCTGTGGCTGATCGGATGGC
ACCGATTTGACCATCTGTCG

Product: IS30 family transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSRCYTQITLADRRRLHHLVAAKVPVNEMARQLGRHRSTIYREIKRNTFHDRELPDYDGYYSTVAHDISRDRRRRLIKLR
RHPALRAEIINQLEARWSPEQIAGRLQSDGFGRIRVCKETIYRFIYSKEDYALGLYQYLPEARRKRRPMRSRKPRDGAFP
STHRISERPDFIGNRSKFGHWEGDLLIFERPLGHANVTTLVERKSRYTVLIKNPSRHSGPIMDKIVRAFSLLPAFARQSF
TFDRGTEFAGFRALEEGIGACSWFCDPSAPWQKGTVENTNKRIRRFLPGSTDLAVVSQRDLLRLTRHINDQPRKCLGYRT
PAEVFIAHLQEGG

Sequences:

>Translated_333_residues
MSRCYTQITLADRRRLHHLVAAKVPVNEMARQLGRHRSTIYREIKRNTFHDRELPDYDGYYSTVAHDISRDRRRRLIKLR
RHPALRAEIINQLEARWSPEQIAGRLQSDGFGRIRVCKETIYRFIYSKEDYALGLYQYLPEARRKRRPMRSRKPRDGAFP
STHRISERPDFIGNRSKFGHWEGDLLIFERPLGHANVTTLVERKSRYTVLIKNPSRHSGPIMDKIVRAFSLLPAFARQSF
TFDRGTEFAGFRALEEGIGACSWFCDPSAPWQKGTVENTNKRIRRFLPGSTDLAVVSQRDLLRLTRHINDQPRKCLGYRT
PAEVFIAHLQEGG
>Mature_332_residues
SRCYTQITLADRRRLHHLVAAKVPVNEMARQLGRHRSTIYREIKRNTFHDRELPDYDGYYSTVAHDISRDRRRRLIKLRR
HPALRAEIINQLEARWSPEQIAGRLQSDGFGRIRVCKETIYRFIYSKEDYALGLYQYLPEARRKRRPMRSRKPRDGAFPS
THRISERPDFIGNRSKFGHWEGDLLIFERPLGHANVTTLVERKSRYTVLIKNPSRHSGPIMDKIVRAFSLLPAFARQSFT
FDRGTEFAGFRALEEGIGACSWFCDPSAPWQKGTVENTNKRIRRFLPGSTDLAVVSQRDLLRLTRHINDQPRKCLGYRTP
AEVFIAHLQEGG

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: COG2826

COG function: function code L; Transposase and inactivated derivatives, IS30 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786450, Length=336, Percent_Identity=33.9285714285714, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI1790736, Length=336, Percent_Identity=33.9285714285714, Blast_Score=168, Evalue=6e-43,
Organism=Escherichia coli, GI1787671, Length=336, Percent_Identity=33.9285714285714, Blast_Score=168, Evalue=6e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR001598 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 38931; Mature: 38800

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRCYTQITLADRRRLHHLVAAKVPVNEMARQLGRHRSTIYREIKRNTFHDRELPDYDGY
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
YSTVAHDISRDRRRRLIKLRRHPALRAEIINQLEARWSPEQIAGRLQSDGFGRIRVCKET
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHH
IYRFIYSKEDYALGLYQYLPEARRKRRPMRSRKPRDGAFPSTHRISERPDFIGNRSKFGH
HHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
WEGDLLIFERPLGHANVTTLVERKSRYTVLIKNPSRHSGPIMDKIVRAFSLLPAFARQSF
CCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCC
TFDRGTEFAGFRALEEGIGACSWFCDPSAPWQKGTVENTNKRIRRFLPGSTDLAVVSQRD
CCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEHHHHH
LLRLTRHINDQPRKCLGYRTPAEVFIAHLQEGG
HHHHHHHCCCCHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SRCYTQITLADRRRLHHLVAAKVPVNEMARQLGRHRSTIYREIKRNTFHDRELPDYDGY
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
YSTVAHDISRDRRRRLIKLRRHPALRAEIINQLEARWSPEQIAGRLQSDGFGRIRVCKET
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHH
IYRFIYSKEDYALGLYQYLPEARRKRRPMRSRKPRDGAFPSTHRISERPDFIGNRSKFGH
HHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
WEGDLLIFERPLGHANVTTLVERKSRYTVLIKNPSRHSGPIMDKIVRAFSLLPAFARQSF
CCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCC
TFDRGTEFAGFRALEEGIGACSWFCDPSAPWQKGTVENTNKRIRRFLPGSTDLAVVSQRD
CCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEHHHHH
LLRLTRHINDQPRKCLGYRTPAEVFIAHLQEGG
HHHHHHHCCCCHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]