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The map label for this gene is yddE [C]

Identifier: 159184722

GI number: 159184722

Start: 1334804

End: 1335721

Strand: Direct

Name: yddE [C]

Synonym: Atu1346

Alternate gene names: 159184722

Gene position: 1334804-1335721 (Clockwise)

Preceding gene: 159184721

Following gene: 15888673

Centisome position: 46.97

GC content: 62.42

Gene sequence:

>918_bases
GTGGCGCTGAACTACGATATCTATGATGTCTTTACCGAGGCGAAAATGGCGGGAAATCCGCTGGCGGTCATGTATGACGC
CGATGATCTTTCGCAGGACACCATGCAGGCGATTGCACGGGAAATGAACCTCTCCGAGACGGTTTTCATCAACCGCTCCA
CCAATCCCTCACATGCGGCTTCGCTGCGTATCTTCACACCGTCAGGCGAATTGCCCTTCGCCGGCCACCCGACCGTCGGC
GCGGCCGTTGCCATTGCCGAGCGCAATCGCGGCGAAGGCGATGACGATATCGATATGGTCTGCGTGCTGGAAGAGAAGGT
GGGGCCGGTGCGCTGTGCGGTGAAGATGCGCGCCGGCGCCGTCAGCTTCGCGGAATTCGACTTGCCGCGCAAATCCTCCC
GCGTCGAGCTGCCGCTTAATCACGCCGCACTCGCCGATGCGCTTGGCGTCAGCGAGGGGCATCTAGGCTTCGAGAATCAT
GTGCCGTCGATCTGGACGGCTGGCGTGCCGTTCCTGCTCGTGCCGATGCACAATATCGCTGCCGTGCGCGACATGGATTT
CGACGCCAATCTCTGGCTGCGCACCGCGCCGCTGGTCGAAGGCTTGCTGGCGGCGGCCTATATCTACTGTCGCGGCGGCG
TGAACCACGCGGCGAAGTTCCATGCCCGCATGTTCTCCCCGGAAATGGGAATTGCGGAAGACCCGGCCACTGGCTCGGCC
GCCGCCGCTCTCTCCGGCGCCATCCACCATTTCGACGGGCTGACGGACGGCCACTATCCGCTCCTGATAGAGCAGGGCGT
GGAAATGGAAAGACCATCCCACATCCACCTGCGCATGGACATCAAGGACAACGAAATCGCCCGCGCCCGCATCGGCGGCC
ACGCGGTGCGGGTTGCATCGGGTACGTTCGAACTTTGA

Upstream 100 bases:

>100_bases
CACAGCTTCTTGATTTGTGCTTGCCGACAAGGGTTGCGATGCGGGGCGACGTGATGCAGTTTGCCAAAGCAGCCGGAATG
ACGAGTGGCAGGAGACGGAT

Downstream 100 bases:

>100_bases
CGTGGAAGAGATATTGCGATGTATCGTGTTCTGCATGACGGCAAAGGTACGACCTGACCATGCTTGACATATATCGCGAC
ACGAGTTCTAAATTCGTCTG

Product: phenazine antibiotic biosynthesis related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MALNYDIYDVFTEAKMAGNPLAVMYDADDLSQDTMQAIAREMNLSETVFINRSTNPSHAASLRIFTPSGELPFAGHPTVG
AAVAIAERNRGEGDDDIDMVCVLEEKVGPVRCAVKMRAGAVSFAEFDLPRKSSRVELPLNHAALADALGVSEGHLGFENH
VPSIWTAGVPFLLVPMHNIAAVRDMDFDANLWLRTAPLVEGLLAAAYIYCRGGVNHAAKFHARMFSPEMGIAEDPATGSA
AAALSGAIHHFDGLTDGHYPLLIEQGVEMERPSHIHLRMDIKDNEIARARIGGHAVRVASGTFEL

Sequences:

>Translated_305_residues
MALNYDIYDVFTEAKMAGNPLAVMYDADDLSQDTMQAIAREMNLSETVFINRSTNPSHAASLRIFTPSGELPFAGHPTVG
AAVAIAERNRGEGDDDIDMVCVLEEKVGPVRCAVKMRAGAVSFAEFDLPRKSSRVELPLNHAALADALGVSEGHLGFENH
VPSIWTAGVPFLLVPMHNIAAVRDMDFDANLWLRTAPLVEGLLAAAYIYCRGGVNHAAKFHARMFSPEMGIAEDPATGSA
AAALSGAIHHFDGLTDGHYPLLIEQGVEMERPSHIHLRMDIKDNEIARARIGGHAVRVASGTFEL
>Mature_304_residues
ALNYDIYDVFTEAKMAGNPLAVMYDADDLSQDTMQAIAREMNLSETVFINRSTNPSHAASLRIFTPSGELPFAGHPTVGA
AVAIAERNRGEGDDDIDMVCVLEEKVGPVRCAVKMRAGAVSFAEFDLPRKSSRVELPLNHAALADALGVSEGHLGFENHV
PSIWTAGVPFLLVPMHNIAAVRDMDFDANLWLRTAPLVEGLLAAAYIYCRGGVNHAAKFHARMFSPEMGIAEDPATGSAA
AALSGAIHHFDGLTDGHYPLLIEQGVEMERPSHIHLRMDIKDNEIARARIGGHAVRVASGTFEL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=311, Percent_Identity=29.903536977492, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI74316009, Length=271, Percent_Identity=30.2583025830258, Blast_Score=88, Evalue=8e-18,
Organism=Escherichia coli, GI1787737, Length=306, Percent_Identity=29.4117647058824, Blast_Score=83, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6321818, Length=317, Percent_Identity=28.0757097791798, Blast_Score=100, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32926; Mature: 32795

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALNYDIYDVFTEAKMAGNPLAVMYDADDLSQDTMQAIAREMNLSETVFINRSTNPSHAA
CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCE
SLRIFTPSGELPFAGHPTVGAAVAIAERNRGEGDDDIDMVCVLEEKVGPVRCAVKMRAGA
EEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEECCCE
VSFAEFDLPRKSSRVELPLNHAALADALGVSEGHLGFENHVPSIWTAGVPFLLVPMHNIA
EEHHHCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCHHCCCCCHHHCCCCEEEEECHHHH
AVRDMDFDANLWLRTAPLVEGLLAAAYIYCRGGVNHAAKFHARMFSPEMGIAEDPATGSA
EEECCCCCCCEEEEHHHHHHHHHHHHHHEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
AAALSGAIHHFDGLTDGHYPLLIEQGVEMERPSHIHLRMDIKDNEIARARIGGHAVRVAS
HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEEEECCCEEEEEEC
GTFEL
CCCCC
>Mature Secondary Structure 
ALNYDIYDVFTEAKMAGNPLAVMYDADDLSQDTMQAIAREMNLSETVFINRSTNPSHAA
CCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCE
SLRIFTPSGELPFAGHPTVGAAVAIAERNRGEGDDDIDMVCVLEEKVGPVRCAVKMRAGA
EEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEECCCE
VSFAEFDLPRKSSRVELPLNHAALADALGVSEGHLGFENHVPSIWTAGVPFLLVPMHNIA
EEHHHCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCHHCCCCCHHHCCCCEEEEECHHHH
AVRDMDFDANLWLRTAPLVEGLLAAAYIYCRGGVNHAAKFHARMFSPEMGIAEDPATGSA
EEECCCCCCCEEEEHHHHHHHHHHHHHHEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
AAALSGAIHHFDGLTDGHYPLLIEQGVEMERPSHIHLRMDIKDNEIARARIGGHAVRVAS
HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEEEECCCEEEEEEC
GTFEL
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]