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The map label for this gene is ydfF [H]

Identifier: 159184717

GI number: 159184717

Start: 1321409

End: 1322092

Strand: Reverse

Name: ydfF [H]

Synonym: Atu1335

Alternate gene names: 159184717

Gene position: 1322092-1321409 (Counterclockwise)

Preceding gene: 159184719

Following gene: 159184716

Centisome position: 46.53

GC content: 64.18

Gene sequence:

>684_bases
ATGAAAGACGGACCCCTTATCGCCAATGTCGCCGCCCTGATCGGGGACCCCGCCCGCGCCAACATATTGACGGCGTTGAT
GGATGGACGTGCGCTGACGGCAAGCGAGCTTGCGGAAGCCGCCGGCGTGACCCTGCAAACCGCCAGCGGGCACCTGTCCA
AGCTCTCAGAGGCACAATTGCTGAAGGCGGAAAAACAGGGGCGACATCGTTATTTCCGTCTCTCCGACGAAGATGTGGCG
CAGGTTCTGGAAGCCTTGATGGGGCTTGCGCAACGCACGGGTGCGGTCCGCGTCCGCACCGGGCCGAAGGACAAGGCGCT
GCGTGAGGCACGCATCTGCTACGACCACCTGGCCGGGGAAAGCGGTGTTGCGCTGCTTTCCGCCATTACCGCTAAGGGAC
TGGTGACATCAGGTGACGACCCGGTGCTGACGGATGACGGGCGCGATTTCTTCTCGAGCTTCGGTATCGATCTATCGCCG
CTGGAAAAGGCTCGGCGGCCGGTGTGCTTGCATTGCCTGGACTGGAGCGAGCGCCGCCATCACCTCGGCGGCGGCCTCGG
TGCATCGCTGCTCGACGCCATGCAGCAGCGCGACTGGCTGCGGCGCGGAAACGGTCGTGTGCTGACCTTCACGGCAAAAG
GTGAAAAGGCCTTCGTCGGCACCTTCGGCTGCACGCCCGCCTGA

Upstream 100 bases:

>100_bases
TCGTAGCGGATGAAACAGGTCAACATCGTTGGTCTCCTCGTTTTCTGTCTCTCCTTTTTATACCATTGCGCAACATCAAT
GCTTCGGCTACCATCGAAGC

Downstream 100 bases:

>100_bases
TTTCGGAAAGAGGCGGCCGTTGCGGGTTTATTTCAGCCAGCCGGCAATACGTCCCACCGCCTCGGCAATGTCAGATACCG
AACCCGCATAGGAAATGCGC

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MKDGPLIANVAALIGDPARANILTALMDGRALTASELAEAAGVTLQTASGHLSKLSEAQLLKAEKQGRHRYFRLSDEDVA
QVLEALMGLAQRTGAVRVRTGPKDKALREARICYDHLAGESGVALLSAITAKGLVTSGDDPVLTDDGRDFFSSFGIDLSP
LEKARRPVCLHCLDWSERRHHLGGGLGASLLDAMQQRDWLRRGNGRVLTFTAKGEKAFVGTFGCTPA

Sequences:

>Translated_227_residues
MKDGPLIANVAALIGDPARANILTALMDGRALTASELAEAAGVTLQTASGHLSKLSEAQLLKAEKQGRHRYFRLSDEDVA
QVLEALMGLAQRTGAVRVRTGPKDKALREARICYDHLAGESGVALLSAITAKGLVTSGDDPVLTDDGRDFFSSFGIDLSP
LEKARRPVCLHCLDWSERRHHLGGGLGASLLDAMQQRDWLRRGNGRVLTFTAKGEKAFVGTFGCTPA
>Mature_227_residues
MKDGPLIANVAALIGDPARANILTALMDGRALTASELAEAAGVTLQTASGHLSKLSEAQLLKAEKQGRHRYFRLSDEDVA
QVLEALMGLAQRTGAVRVRTGPKDKALREARICYDHLAGESGVALLSAITAKGLVTSGDDPVLTDDGRDFFSSFGIDLSP
LEKARRPVCLHCLDWSERRHHLGGGLGASLLDAMQQRDWLRRGNGRVLTFTAKGEKAFVGTFGCTPA

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 24262; Mature: 24262

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDGPLIANVAALIGDPARANILTALMDGRALTASELAEAAGVTLQTASGHLSKLSEAQL
CCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCHHHHHHHHHH
LKAEKQGRHRYFRLSDEDVAQVLEALMGLAQRTGAVRVRTGPKDKALREARICYDHLAGE
HHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCC
SGVALLSAITAKGLVTSGDDPVLTDDGRDFFSSFGIDLSPLEKARRPVCLHCLDWSERRH
CHHHHHHHHHHCCCEECCCCCEECCCCHHHHHHCCCCCCHHHHCCCCEEEEECCHHHHHH
HLGGGLGASLLDAMQQRDWLRRGNGRVLTFTAKGEKAFVGTFGCTPA
HCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCC
>Mature Secondary Structure
MKDGPLIANVAALIGDPARANILTALMDGRALTASELAEAAGVTLQTASGHLSKLSEAQL
CCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCHHHHHHHHHH
LKAEKQGRHRYFRLSDEDVAQVLEALMGLAQRTGAVRVRTGPKDKALREARICYDHLAGE
HHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCC
SGVALLSAITAKGLVTSGDDPVLTDDGRDFFSSFGIDLSPLEKARRPVCLHCLDWSERRH
CHHHHHHHHHHCCCEECCCCCEECCCCHHHHHHCCCCCCHHHHCCCCEEEEECCHHHHHH
HLGGGLGASLLDAMQQRDWLRRGNGRVLTFTAKGEKAFVGTFGCTPA
HCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]