Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184714
Identifier: 159184714
GI number: 159184714
Start: 1315775
End: 1316212
Strand: Direct
Name: 159184714
Synonym: Atu1328
Alternate gene names: NA
Gene position: 1315775-1316212 (Clockwise)
Preceding gene: 15888652
Following gene: 15888659
Centisome position: 46.3
GC content: 58.22
Gene sequence:
>438_bases ATGAGGAAAATCACGCGGGATCGTTCTTTGCGTGCGCTGACAGTCTCGCTGTTTGCGGCGGTCTCTGCTGTCCTCATCGT ATCACCCGTCGCCGCCGCCCGTCTGGAAAACCGCGTCGCGGTGTTTTCCGGCATCGACAAGATCACCGGCCGCATCACCT CCTTCGATGTCTATATCGACGAGACGGTGCAGTTTGGCGCGCTTCAGGTGACGCCGAAGGTCTGTTATTCCCGCGACCAG ACGGAAACGCAAAAGATCGACGCCTTTGTCGAAGTCGACGAAATCACCCTCGATCGCAAGATCCGCCGTATTTTCACCGG CTGGATGTTTGCCGATAGCCCCGGCCTCAACGCCGTGGAGCACCCGATCTATGACGTGTGGCTGACGGGTTGCAAGCAGG ACTCCGAGGTTCCAGCTCCCTCAACGGCAAGCAAATAA
Upstream 100 bases:
>100_bases CCGCGCTTGTATCCGGCCTCACCGGTTTTTGCCACATTCCGCCCTTAGGCGTTGATCCGGTCGGCGTCTCGACACAGGCA AATATTTGGAGACATATCGT
Downstream 100 bases:
>100_bases CCTAACGTAAAGACTAGAATTGCAGGCTCGGCCGGTTGACGGCGAGATCGAGCATTCTTGCATAGTCCAGCTTGGGCACG TCTATCGCGCCGAACGTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: Signal Peptide; Signal Peptide Protein
Number of amino acids: Translated: 145; Mature: 145
Protein sequence:
>145_residues MRKITRDRSLRALTVSLFAAVSAVLIVSPVAAARLENRVAVFSGIDKITGRITSFDVYIDETVQFGALQVTPKVCYSRDQ TETQKIDAFVEVDEITLDRKIRRIFTGWMFADSPGLNAVEHPIYDVWLTGCKQDSEVPAPSTASK
Sequences:
>Translated_145_residues MRKITRDRSLRALTVSLFAAVSAVLIVSPVAAARLENRVAVFSGIDKITGRITSFDVYIDETVQFGALQVTPKVCYSRDQ TETQKIDAFVEVDEITLDRKIRRIFTGWMFADSPGLNAVEHPIYDVWLTGCKQDSEVPAPSTASK >Mature_145_residues MRKITRDRSLRALTVSLFAAVSAVLIVSPVAAARLENRVAVFSGIDKITGRITSFDVYIDETVQFGALQVTPKVCYSRDQ TETQKIDAFVEVDEITLDRKIRRIFTGWMFADSPGLNAVEHPIYDVWLTGCKQDSEVPAPSTASK
Specific function: Unknown
COG id: COG4765
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16111; Mature: 16111
Theoretical pI: Translated: 7.25; Mature: 7.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKITRDRSLRALTVSLFAAVSAVLIVSPVAAARLENRVAVFSGIDKITGRITSFDVYID CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHCCEEEEEEEEE ETVQFGALQVTPKVCYSRDQTETQKIDAFVEVDEITLDRKIRRIFTGWMFADSPGLNAVE CCCCCCEEEECHHHHCCCCCCHHHHHHHHEEHHHHHHHHHHHHHHHHHHEECCCCCCHHH HPIYDVWLTGCKQDSEVPAPSTASK CCHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MRKITRDRSLRALTVSLFAAVSAVLIVSPVAAARLENRVAVFSGIDKITGRITSFDVYID CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHCCEEEEEEEEE ETVQFGALQVTPKVCYSRDQTETQKIDAFVEVDEITLDRKIRRIFTGWMFADSPGLNAVE CCCCCCEEEECHHHHCCCCCCHHHHHHHHEEHHHHHHHHHHHHHHHHHHEECCCCCCHHH HPIYDVWLTGCKQDSEVPAPSTASK CCHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA