Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184683
Identifier: 159184683
GI number: 159184683
Start: 1237221
End: 1238057
Strand: Reverse
Name: 159184683
Synonym: Atu1248
Alternate gene names: NA
Gene position: 1238057-1237221 (Counterclockwise)
Preceding gene: 17935152
Following gene: 159184682
Centisome position: 43.57
GC content: 62.01
Gene sequence:
>837_bases GTGACATTTGACATTCTTCTTCTGGTGCTCCTGGGCGCGGTGCTGCATGCCGGATGGAATGCGCTGGTCAAATCCGGATC CGACAAATCGCTGGACGCCTCGCTGATTGCGGCAGGGGCTGCGGCCTGCTCCTTGCCCTTTCTGCCTTTCCTGCCCTTTC CCGCGCCGGTGGCCATTCCTTTTCTGATTGCCTCGGCGGTTCTGCAATTCGCCTATTTCCGCCTTGTCGCCGCCGCCTAT ACGATCGGCGATATCGGCCTCGTTTATCCCGTCATGCGCGGTGTGGCGCCTTTGATCGTTGCCGCAACGAGCAGCCTGTT CCTCAGCGAGGTGTTAAGCCCGCTCGCACTCGCCGGCATCGCCGTCATTTCCGGCGGCATCCTGACGCTGGCTTTCGAAG CGCGGCGCGGCGGCGGAAAGGCGATCCTGGTCGCTCTTCTCAATGCCTTCGTGATCGCCTCCTACACCTTCGTCGATGGT GTCGGCGCCCGGCTTTCCGGCAATGCGATCTCCTATACGCTGTGGATGTCGCTTCTGCCGCCGGTGCTGCTGTTCGGTTT TGCCTTTTACCAGCGTGGCGTCGGCCCGGTCGCGCGGCATGTGCAACGCAACTGGTGGCGCGGCCTGATTGGCGGCGGCG GCTCCATTCTGTCCTACGGTCTGGCGCTCTATGCCATGACCAAGGCTCCCGTCGCCGTCGTCGCTGCACTTAGGGAAACC TCCATTCTCTTTGCGCTGGTGATCTCCGTCGTCATCCTGAAGGAACGCGCCAGCATTTGGCGTTATCTCGCCGGCGGTAT CATTGCAGCGGGTGTTCTGGTGATGCGGCTCGGCTAA
Upstream 100 bases:
>100_bases ATGGGCAATCGGAAAAGGCTTGTTGCCCGCGGGAAATCGATTCCGGTTTGCAAACCAATGGTATAGGTTGCCCAAATTAG CCGGCGAGCGAGTCTCTATC
Downstream 100 bases:
>100_bases AAAGGGTCAACTTAATGGGGTAAAATAATACCCCATATCTAACATACTGTTTTTATTTATTTATTTTTACGGTCAGTAAA ATCAGTCATATTGACGCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; Integral Membrane; Inner Membrane Protein; Transporter Dme Family; Transporter Permease Protein; Drug/Metabolite Transporter Superfamily Protein; EmrE Membrane Transporter Of Cations And Cationic Drugs; Drug/Metabolite Transporter Superfamily Permease; Drug/Metabolite Exporter Family Protein; Transporter Of DMT Superfamily; Permease Protein; DMT Family Permease
Number of amino acids: Translated: 278; Mature: 277
Protein sequence:
>278_residues MTFDILLLVLLGAVLHAGWNALVKSGSDKSLDASLIAAGAAACSLPFLPFLPFPAPVAIPFLIASAVLQFAYFRLVAAAY TIGDIGLVYPVMRGVAPLIVAATSSLFLSEVLSPLALAGIAVISGGILTLAFEARRGGGKAILVALLNAFVIASYTFVDG VGARLSGNAISYTLWMSLLPPVLLFGFAFYQRGVGPVARHVQRNWWRGLIGGGGSILSYGLALYAMTKAPVAVVAALRET SILFALVISVVILKERASIWRYLAGGIIAAGVLVMRLG
Sequences:
>Translated_278_residues MTFDILLLVLLGAVLHAGWNALVKSGSDKSLDASLIAAGAAACSLPFLPFLPFPAPVAIPFLIASAVLQFAYFRLVAAAY TIGDIGLVYPVMRGVAPLIVAATSSLFLSEVLSPLALAGIAVISGGILTLAFEARRGGGKAILVALLNAFVIASYTFVDG VGARLSGNAISYTLWMSLLPPVLLFGFAFYQRGVGPVARHVQRNWWRGLIGGGGSILSYGLALYAMTKAPVAVVAALRET SILFALVISVVILKERASIWRYLAGGIIAAGVLVMRLG >Mature_277_residues TFDILLLVLLGAVLHAGWNALVKSGSDKSLDASLIAAGAAACSLPFLPFLPFPAPVAIPFLIASAVLQFAYFRLVAAAYT IGDIGLVYPVMRGVAPLIVAATSSLFLSEVLSPLALAGIAVISGGILTLAFEARRGGGKAILVALLNAFVIASYTFVDGV GARLSGNAISYTLWMSLLPPVLLFGFAFYQRGVGPVARHVQRNWWRGLIGGGGSILSYGLALYAMTKAPVAVVAALRETS ILFALVISVVILKERASIWRYLAGGIIAAGVLVMRLG
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28989; Mature: 28858
Theoretical pI: Translated: 10.33; Mature: 10.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFDILLLVLLGAVLHAGWNALVKSGSDKSLDASLIAAGAAACSLPFLPFLPFPAPVAIP CHHHHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH FLIASAVLQFAYFRLVAAAYTIGDIGLVYPVMRGVAPLIVAATSSLFLSEVLSPLALAGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVISGGILTLAFEARRGGGKAILVALLNAFVIASYTFVDGVGARLSGNAISYTLWMSLLP HHHHCCHHEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH PVLLFGFAFYQRGVGPVARHVQRNWWRGLIGGGGSILSYGLALYAMTKAPVAVVAALRET HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH SILFALVISVVILKERASIWRYLAGGIIAAGVLVMRLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TFDILLLVLLGAVLHAGWNALVKSGSDKSLDASLIAAGAAACSLPFLPFLPFPAPVAIP HHHHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH FLIASAVLQFAYFRLVAAAYTIGDIGLVYPVMRGVAPLIVAATSSLFLSEVLSPLALAGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVISGGILTLAFEARRGGGKAILVALLNAFVIASYTFVDGVGARLSGNAISYTLWMSLLP HHHHCCHHEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH PVLLFGFAFYQRGVGPVARHVQRNWWRGLIGGGGSILSYGLALYAMTKAPVAVVAALRET HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH SILFALVISVVILKERASIWRYLAGGIIAAGVLVMRLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA