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The map label for this gene is ihfA

Identifier: 159184652

GI number: 159184652

Start: 1173774

End: 1174112

Strand: Direct

Name: ihfA

Synonym: Atu1180

Alternate gene names: 159184652

Gene position: 1173774-1174112 (Clockwise)

Preceding gene: 15888517

Following gene: 159184653

Centisome position: 41.31

GC content: 56.93

Gene sequence:

>339_bases
ATGGCCGGGAAGACAGTGACACGCGCAGATCTTGCAGAATCTGTGTTTCGTAAAGTCGGGCTGTCCCGCACCGAATCCGC
CGAACTGGTCGAAACGATCATCGACGAGATTTGTAACGCGATCACCCGCGGTGAGGTGGTCAAGCTTTCGTCCTTCGCCA
CTTTCCAGATCCGGGAAAAGAACGAGCGTATCGGCCGTAACCCGAAGACGGGTGAGGAAGTTCCGATTTCGCCGCGCCGT
GTCATGACCTTCAAGGCTTCGAATGTGCTGAAACAGCGCATTCTCAAGGCCCATACGGCCCGCAAGGCCAAGCAGAAGGG
CCAGAAGGCCGGGGTATAA

Upstream 100 bases:

>100_bases
AGCCTAAAATGAATCTGGAACAATCCCTTGACCGGTCGCCACAAGGGAAATAATCTCGGCGGCTCCTAGAGAAAAATTCA
GACACGGTTTGTGGGGAAAA

Downstream 100 bases:

>100_bases
GCCGGACTTGAAGCCGCCGCGACACGCGCTTTTTGCCGTATCGCAAGCCTTTTTATCCATTCTTCCTGTGAACATACTTG
AATTTCAACGTGCAAGCCGT

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MAGKTVTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNERIGRNPKTGEEVPISPRR
VMTFKASNVLKQRILKAHTARKAKQKGQKAGV

Sequences:

>Translated_112_residues
MAGKTVTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNERIGRNPKTGEEVPISPRR
VMTFKASNVLKQRILKAHTARKAKQKGQKAGV
>Mature_111_residues
AGKTVTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNERIGRNPKTGEEVPISPRRV
MTFKASNVLKQRILKAHTARKAKQKGQKAGV

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=92, Percent_Identity=50, Blast_Score=100, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_AGRT5 (Q8UG61)

Other databases:

- EMBL:   AE007869
- PIR:   AB2722
- PIR:   G97503
- RefSeq:   NP_354199.2
- ProteinModelPortal:   Q8UG61
- SMR:   Q8UG61
- STRING:   Q8UG61
- GeneID:   1133218
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu1180
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   VRGETVK
- PhylomeDB:   Q8UG61
- ProtClustDB:   PRK00285
- BioCyc:   ATUM176299-1:ATU1180-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 12424; Mature: 12292

Theoretical pI: Translated: 11.18; Mature: 11.18

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGKTVTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREK
CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCH
NERIGRNPKTGEEVPISPRRVMTFKASNVLKQRILKAHTARKAKQKGQKAGV
HHHCCCCCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AGKTVTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREK
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCH
NERIGRNPKTGEEVPISPRRVMTFKASNVLKQRILKAHTARKAKQKGQKAGV
HHHCCCCCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194