Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184638
Identifier: 159184638
GI number: 159184638
Start: 1138608
End: 1139966
Strand: Reverse
Name: 159184638
Synonym: Atu1148
Alternate gene names: NA
Gene position: 1139966-1138608 (Counterclockwise)
Preceding gene: 15888487
Following gene: 159184637
Centisome position: 40.12
GC content: 60.34
Gene sequence:
>1359_bases ATGAAGCACATTCTTTTTGCGTCCTGCGCCATCCTTGCGTTCGCCTCCATCTCGCACGCGGCCGAACAGGAATTCCCTGC AAAGCTGGTCTCCCACGCCATCCTGCCGGCGAACACCATCATCCCGGCGCCCACTGACGCGCCTGAACACCTCAAGACCT CCGCCAAGTTCACCACCGCCGACCGCAAGCGCGCGGAAGGTCTCGGCACCGTGCCGGGCAAGGACGGCGTGCGACTGACC GGTCTTTCCATGCCGTTTAACGGCCAGCCGATGCAGGGTTTCTCCGGCATCAAGGCGATGCCCGACGGCAGCTTCTGGAG CCTTTCCGACAATGGCTTCGGCTCCAAGCTCAATTCCAGCGACGCCATGCTGATGCTTCACCATCTGAAGTTCGACTGGG ACGCCGGCAAGGTCAATGCGCTGGAGACCGTGTTTCTCTCCGACCCTGACATGAAGGCACCCTTCCCCATCGTTCTCGAA GGCTCCAGCAAGCGTTACCTGACCGGTGCGGATTTCGACGTCGAATCCATTCAGCCGGTCGCCGATGGTTTCTGGGTGGG CGAGGAATTCGGCCCCTATATCCTGAAATTCACCCGCGACGGCAAGCTGACCGATGTCATCTCCACCAAGGCCGGCGACA TCGAGGTGAAGTCTCCCGATCATCCCACGCTCGCCCTGCCCGGCAACCCGACGCAGAAAATGCCGGCCTTCAACCTGAAA CGATCTGGCGGCTATGAGGGCATGGCGCTCTCCAAGGACGGCTCGAAGCTTTACGGCCTTCTGGAAGGCCCGCTTTACAT GGCCGATGGCCAGGTGGAGAAGACCGAAGACGGCGCGACCGCGCTGCGCATCATCGAACTCGACACCGCCAAGAAAGAAT GGACCGGCCGCACCTGGCTCTATCCGCTGGCGCAGGGCGGCGAAGCCATCGGCGACTTCAACATGCTTGATGACAGCACC GCACTGGTCATCGAACGCGACAACGGCGCCGGCACCGCCGACAAGGCCTGCGCCGACCCGAAGAAGCCGGAAGCAAACTG CTTTGCCTTGCCCGCCAAGGTGAAGCGCATCTACAAGATCGAATTTAATGACGCCAAAGTCGGCAAGGCCGCCCGCAAGA TCGGCTATATCGATCTTCTGAAAATCTCCGATCCCGACAACAAGAAGCGTCAGGGCGGCGGCAATGGTTATTACGACATG CCTTTCGTCACCATCGAGAATGTCGACCGTGTCGATGCCACGCATATCATCGTTGGCAACGACAACAACCTGCCCTTCTC GGCCGGCCGCGCGCTGGACAAGGCTGACGACAACGAATTCGTCCTGCTTGAGGTCAAGGATCTGCTGGACGCGAAGTAA
Upstream 100 bases:
>100_bases AAAATTTCATCAAAGCTTCAAACGGCAATCACCTGCCTGTCATGCGGCGACCCTATCGCGTCAATCCTGTCTTCAACAGG TATTGAGAGGGGTCTCCATC
Downstream 100 bases:
>100_bases GACCAAGGCTGCTGCCAATCGCTTTGGTAGCCGCGAATGATCCCCACGGAGCGCCCCGCAGACCAATATGTGCATGGCGC TCCGTTCCGATTCTCCAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: Signal Peptide Protein; Signal Peptide; Periplasmic Protein; Glycerophosphoryl Diester Phosphodiesterase Family; PEP-CTERM Exosortase Interaction Domain Protein
Number of amino acids: Translated: 452; Mature: 452
Protein sequence:
>452_residues MKHILFASCAILAFASISHAAEQEFPAKLVSHAILPANTIIPAPTDAPEHLKTSAKFTTADRKRAEGLGTVPGKDGVRLT GLSMPFNGQPMQGFSGIKAMPDGSFWSLSDNGFGSKLNSSDAMLMLHHLKFDWDAGKVNALETVFLSDPDMKAPFPIVLE GSSKRYLTGADFDVESIQPVADGFWVGEEFGPYILKFTRDGKLTDVISTKAGDIEVKSPDHPTLALPGNPTQKMPAFNLK RSGGYEGMALSKDGSKLYGLLEGPLYMADGQVEKTEDGATALRIIELDTAKKEWTGRTWLYPLAQGGEAIGDFNMLDDST ALVIERDNGAGTADKACADPKKPEANCFALPAKVKRIYKIEFNDAKVGKAARKIGYIDLLKISDPDNKKRQGGGNGYYDM PFVTIENVDRVDATHIIVGNDNNLPFSAGRALDKADDNEFVLLEVKDLLDAK
Sequences:
>Translated_452_residues MKHILFASCAILAFASISHAAEQEFPAKLVSHAILPANTIIPAPTDAPEHLKTSAKFTTADRKRAEGLGTVPGKDGVRLT GLSMPFNGQPMQGFSGIKAMPDGSFWSLSDNGFGSKLNSSDAMLMLHHLKFDWDAGKVNALETVFLSDPDMKAPFPIVLE GSSKRYLTGADFDVESIQPVADGFWVGEEFGPYILKFTRDGKLTDVISTKAGDIEVKSPDHPTLALPGNPTQKMPAFNLK RSGGYEGMALSKDGSKLYGLLEGPLYMADGQVEKTEDGATALRIIELDTAKKEWTGRTWLYPLAQGGEAIGDFNMLDDST ALVIERDNGAGTADKACADPKKPEANCFALPAKVKRIYKIEFNDAKVGKAARKIGYIDLLKISDPDNKKRQGGGNGYYDM PFVTIENVDRVDATHIIVGNDNNLPFSAGRALDKADDNEFVLLEVKDLLDAK >Mature_452_residues MKHILFASCAILAFASISHAAEQEFPAKLVSHAILPANTIIPAPTDAPEHLKTSAKFTTADRKRAEGLGTVPGKDGVRLT GLSMPFNGQPMQGFSGIKAMPDGSFWSLSDNGFGSKLNSSDAMLMLHHLKFDWDAGKVNALETVFLSDPDMKAPFPIVLE GSSKRYLTGADFDVESIQPVADGFWVGEEFGPYILKFTRDGKLTDVISTKAGDIEVKSPDHPTLALPGNPTQKMPAFNLK RSGGYEGMALSKDGSKLYGLLEGPLYMADGQVEKTEDGATALRIIELDTAKKEWTGRTWLYPLAQGGEAIGDFNMLDDST ALVIERDNGAGTADKACADPKKPEANCFALPAKVKRIYKIEFNDAKVGKAARKIGYIDLLKISDPDNKKRQGGGNGYYDM PFVTIENVDRVDATHIIVGNDNNLPFSAGRALDKADDNEFVLLEVKDLLDAK
Specific function: Unknown
COG id: COG4222
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48921; Mature: 48921
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHILFASCAILAFASISHAAEQEFPAKLVSHAILPANTIIPAPTDAPEHLKTSAKFTTA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEEC DRKRAEGLGTVPGKDGVRLTGLSMPFNGQPMQGFSGIKAMPDGSFWSLSDNGFGSKLNSS HHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCCCC DAMLMLHHLKFDWDAGKVNALETVFLSDPDMKAPFPIVLEGSSKRYLTGADFDVESIQPV CCEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEEECCCCEEEECCCCCHHHCCHH ADGFWVGEEFGPYILKFTRDGKLTDVISTKAGDIEVKSPDHPTLALPGNPTQKMPAFNLK HCCEEECCCCCCEEEEEECCCCEEEEEECCCCCEEECCCCCCEEEECCCCCCCCCCCCCC RSGGYEGMALSKDGSKLYGLLEGPLYMADGQVEKTEDGATALRIIELDTAKKEWTGRTWL CCCCCCCEEECCCCCEEEEEEECCEEEECCCCEECCCCCEEEEEEEECCCCHHHCCCEEE YPLAQGGEAIGDFNMLDDSTALVIERDNGAGTADKACADPKKPEANCFALPAKVKRIYKI EEECCCCCCCCCCEECCCCEEEEEECCCCCCCCCHHCCCCCCCCCCEEECCHHEEEEEEE EFNDAKVGKAARKIGYIDLLKISDPDNKKRQGGGNGYYDMPFVTIENVDRVDATHIIVGN EECCCHHHHHHHHCCCEEEEEECCCCCHHHCCCCCCEECCCEEEECCCCCCCEEEEEEEC DNNLPFSAGRALDKADDNEFVLLEVKDLLDAK CCCCCCCCCCCCCCCCCCCEEEEEEHHHCCCC >Mature Secondary Structure MKHILFASCAILAFASISHAAEQEFPAKLVSHAILPANTIIPAPTDAPEHLKTSAKFTTA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCEEEEC DRKRAEGLGTVPGKDGVRLTGLSMPFNGQPMQGFSGIKAMPDGSFWSLSDNGFGSKLNSS HHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCCCC DAMLMLHHLKFDWDAGKVNALETVFLSDPDMKAPFPIVLEGSSKRYLTGADFDVESIQPV CCEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEEECCCCEEEECCCCCHHHCCHH ADGFWVGEEFGPYILKFTRDGKLTDVISTKAGDIEVKSPDHPTLALPGNPTQKMPAFNLK HCCEEECCCCCCEEEEEECCCCEEEEEECCCCCEEECCCCCCEEEECCCCCCCCCCCCCC RSGGYEGMALSKDGSKLYGLLEGPLYMADGQVEKTEDGATALRIIELDTAKKEWTGRTWL CCCCCCCEEECCCCCEEEEEEECCEEEECCCCEECCCCCEEEEEEEECCCCHHHCCCEEE YPLAQGGEAIGDFNMLDDSTALVIERDNGAGTADKACADPKKPEANCFALPAKVKRIYKI EEECCCCCCCCCCEECCCCEEEEEECCCCCCCCCHHCCCCCCCCCCEEECCHHEEEEEEE EFNDAKVGKAARKIGYIDLLKISDPDNKKRQGGGNGYYDMPFVTIENVDRVDATHIIVGN EECCCHHHHHHHHCCCEEEEEECCCCCHHHCCCCCCEECCCEEEECCCCCCCEEEEEEEC DNNLPFSAGRALDKADDNEFVLLEVKDLLDAK CCCCCCCCCCCCCCCCCCCEEEEEEHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA