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The map label for this gene is ybfI [H]

Identifier: 159184605

GI number: 159184605

Start: 1072651

End: 1073472

Strand: Direct

Name: ybfI [H]

Synonym: Atu1081

Alternate gene names: 159184605

Gene position: 1072651-1073472 (Clockwise)

Preceding gene: 159184602

Following gene: 15888425

Centisome position: 37.75

GC content: 61.8

Gene sequence:

>822_bases
ATGCCCGTTGCCACGACGGAAACCACGCGTTTCTGGCGTGACCGGCGTTTTGGCGGCATGGAATGCCTGAGCGCGACGTT
CCTCACCCATGAATATTCGCCGCATGCGCATGACACGTTTTCCATAGGCGCCATCGAAAGCGGCTCGCAGATTTCCACCA
TTCAGGGCACCACTGAACAGACGGGGCCGGGGCACCTTTATCTCATCAATCCCGACGAGGTTCACGACGGAGCGCCGGGC
GGTGGCGGTTATCGCTACCGCATGATCTACCCCGACGCGGAACTGTTGCGCGACATCATCGAGGACGTGACGGGCAGGGT
CTTTCACGGCATGCCGTCCTTCCCGAAGTTTCTGCCGCGCGATCCTCAGATGGCCGCCTCCTTCCAGATGGCGCATCGGC
GGCTGGAAGCCAAAACCGGCGCGCTGGAAGCGGATGAGGGCATGTTCTCGGTTCTCGCCGCGCTGTTTGGAAGGCACGGC
AGCGCCATCATCCTGGCCGTCGAAACCCGCGAAAAAACGGCGGTCTATAACGCCCGCGACTATCTTACCGATAATTACGA
AACCGATATCGGCTTGGAGGAACTGGCGTCCATCGCCGGTCTCAGCCGTGCCCACCTCATCCGCGCGTTTCGCAAGGAGT
TTCACATCACTCCACATGCCTATCTGACGGATGTGCGCATCCGGCAGGCGCGCCGCCTGCTACGCGCCGGTGAGATGCCG
GCCGAGGTGGCGGCACTGTGCGGTTTTGCCGATCAGGCGCATTTTACCCGGCATTTCAAGGCGCGCACCGGCGTCACGCC
GGGCCAATTTCGGCTTGGGTAA

Upstream 100 bases:

>100_bases
GAACCGGCCAGACCCTAGCACTTTTGTTCAAGACGGTAAGGATCGAATGCTTTAAACTTGACTCATGCACAATGTTTCGC
AGGAACAGGCTCTGGATGTC

Downstream 100 bases:

>100_bases
GGGCAACGGTTTTCCATAAAAACCGTGCGGCAGCACTTTCGTTCAAGACCACCCTGGCGTCCCCGGCGTAATTCCTCCCG
CCTGAAAGGGAGAATGCGAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MPVATTETTRFWRDRRFGGMECLSATFLTHEYSPHAHDTFSIGAIESGSQISTIQGTTEQTGPGHLYLINPDEVHDGAPG
GGGYRYRMIYPDAELLRDIIEDVTGRVFHGMPSFPKFLPRDPQMAASFQMAHRRLEAKTGALEADEGMFSVLAALFGRHG
SAIILAVETREKTAVYNARDYLTDNYETDIGLEELASIAGLSRAHLIRAFRKEFHITPHAYLTDVRIRQARRLLRAGEMP
AEVAALCGFADQAHFTRHFKARTGVTPGQFRLG

Sequences:

>Translated_273_residues
MPVATTETTRFWRDRRFGGMECLSATFLTHEYSPHAHDTFSIGAIESGSQISTIQGTTEQTGPGHLYLINPDEVHDGAPG
GGGYRYRMIYPDAELLRDIIEDVTGRVFHGMPSFPKFLPRDPQMAASFQMAHRRLEAKTGALEADEGMFSVLAALFGRHG
SAIILAVETREKTAVYNARDYLTDNYETDIGLEELASIAGLSRAHLIRAFRKEFHITPHAYLTDVRIRQARRLLRAGEMP
AEVAALCGFADQAHFTRHFKARTGVTPGQFRLG
>Mature_272_residues
PVATTETTRFWRDRRFGGMECLSATFLTHEYSPHAHDTFSIGAIESGSQISTIQGTTEQTGPGHLYLINPDEVHDGAPGG
GGYRYRMIYPDAELLRDIIEDVTGRVFHGMPSFPKFLPRDPQMAASFQMAHRRLEAKTGALEADEGMFSVLAALFGRHGS
AIILAVETREKTAVYNARDYLTDNYETDIGLEELASIAGLSRAHLIRAFRKEFHITPHAYLTDVRIRQARRLLRAGEMPA
EVAALCGFADQAHFTRHFKARTGVTPGQFRLG

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30384; Mature: 30253

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVATTETTRFWRDRRFGGMECLSATFLTHEYSPHAHDTFSIGAIESGSQISTIQGTTEQ
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEEECCCCC
TGPGHLYLINPDEVHDGAPGGGGYRYRMIYPDAELLRDIIEDVTGRVFHGMPSFPKFLPR
CCCCEEEEECCHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHCCC
DPQMAASFQMAHRRLEAKTGALEADEGMFSVLAALFGRHGSAIILAVETREKTAVYNARD
CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHEECHHH
YLTDNYETDIGLEELASIAGLSRAHLIRAFRKEFHITPHAYLTDVRIRQARRLLRAGEMP
HHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
AEVAALCGFADQAHFTRHFKARTGVTPGQFRLG
HHHHHHHCCHHHHHHHHHHHHHCCCCCCCEECC
>Mature Secondary Structure 
PVATTETTRFWRDRRFGGMECLSATFLTHEYSPHAHDTFSIGAIESGSQISTIQGTTEQ
CCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEEECCCCC
TGPGHLYLINPDEVHDGAPGGGGYRYRMIYPDAELLRDIIEDVTGRVFHGMPSFPKFLPR
CCCCEEEEECCHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHCCC
DPQMAASFQMAHRRLEAKTGALEADEGMFSVLAALFGRHGSAIILAVETREKTAVYNARD
CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHEECHHH
YLTDNYETDIGLEELASIAGLSRAHLIRAFRKEFHITPHAYLTDVRIRQARRLLRAGEMP
HHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
AEVAALCGFADQAHFTRHFKARTGVTPGQFRLG
HHHHHHHCCHHHHHHHHHHHHHCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]