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The map label for this gene is cycL [H]

Identifier: 159184558

GI number: 159184558

Start: 965351

End: 965947

Strand: Direct

Name: cycL [H]

Synonym: Atu0976

Alternate gene names: 159184558

Gene position: 965351-965947 (Clockwise)

Preceding gene: 15888318

Following gene: 15888320

Centisome position: 33.97

GC content: 59.8

Gene sequence:

>597_bases
ATGAGTGTTGCCTCGCTACCCTCATTCCTGTGCTTGTCACAGGAATCCAGCCGACGCGCGTCTGCGCGGCGAGAGAGTCC
TTCAAGCCCAAGGACTTGGGCTGGCTGGATTCCTGTGACGGGCACAGGAATGAGGGAGTGTGTGGTGGCGCTCTGTCTGC
TTCTCACCCTGATCTTCGCTGCAGCTTCTCCCGCTCTCGCCTTCAATCCGGACGAAGTCCTCAAAGACCCCGTGCTGGAA
CAGCGCGCCCGCAACCTTACCTCTCAGCTCCGCTGCATGGTCTGCCAGAACCAGTCTATCGACGACAGCAATGCCGAGCT
GGCGCGTGACCTGCGTGTCCTCGTGCGCGAAAGGCTGGTTCAGGGCGACAGCGACAAGGCCGTCATCGATTATGTCGTGT
CGCGTTACGGCGAATTCGTGCTCCTGAAGCCACGCCTCAGCCTGCGCACCTTGCTTTTATGGGGCGCGCCCATCGGCCTC
ACCCTTGCCGGGATTTTCGCCGTCTTCGTGTTTTCGCGCCGCCGCGCCACCCAGGAACGCCCACAAAAACTGAGTGCGGA
TGAAGAAGAGCGCATTCGCAATCTCATTGAAAAATAA

Upstream 100 bases:

>100_bases
TGGCGGGCGGTTTCATCTCGCTTTCCGACAGGCGGTTGCGGGTGGGTGCGCCGACCCGCAAGGCGAAGCCTGTACGGGCT
GCAATGCCGGAGGCGGCGGA

Downstream 100 bases:

>100_bases
CCGGTTTTCATTTTCATCCTCGGTTCTTTTTCAACATTACGGATTTTTCATTCCTCAGACACTTCGCCGTAAGGTGTTGC
CTCCTATATCTTCATCATCC

Product: cycL protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MSVASLPSFLCLSQESSRRASARRESPSSPRTWAGWIPVTGTGMRECVVALCLLLTLIFAAASPALAFNPDEVLKDPVLE
QRARNLTSQLRCMVCQNQSIDDSNAELARDLRVLVRERLVQGDSDKAVIDYVVSRYGEFVLLKPRLSLRTLLLWGAPIGL
TLAGIFAVFVFSRRRATQERPQKLSADEEERIRNLIEK

Sequences:

>Translated_198_residues
MSVASLPSFLCLSQESSRRASARRESPSSPRTWAGWIPVTGTGMRECVVALCLLLTLIFAAASPALAFNPDEVLKDPVLE
QRARNLTSQLRCMVCQNQSIDDSNAELARDLRVLVRERLVQGDSDKAVIDYVVSRYGEFVLLKPRLSLRTLLLWGAPIGL
TLAGIFAVFVFSRRRATQERPQKLSADEEERIRNLIEK
>Mature_197_residues
SVASLPSFLCLSQESSRRASARRESPSSPRTWAGWIPVTGTGMRECVVALCLLLTLIFAAASPALAFNPDEVLKDPVLEQ
RARNLTSQLRCMVCQNQSIDDSNAELARDLRVLVRERLVQGDSDKAVIDYVVSRYGEFVLLKPRLSLRTLLLWGAPIGLT
LAGIFAVFVFSRRRATQERPQKLSADEEERIRNLIEK

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=117, Percent_Identity=41.8803418803419, Blast_Score=88, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 22131; Mature: 22000

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVASLPSFLCLSQESSRRASARRESPSSPRTWAGWIPVTGTGMRECVVALCLLLTLIFA
CCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHH
AASPALAFNPDEVLKDPVLEQRARNLTSQLRCMVCQNQSIDDSNAELARDLRVLVRERLV
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
QGDSDKAVIDYVVSRYGEFVLLKPRLSLRTLLLWGAPIGLTLAGIFAVFVFSRRRATQER
CCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
PQKLSADEEERIRNLIEK
HHHCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SVASLPSFLCLSQESSRRASARRESPSSPRTWAGWIPVTGTGMRECVVALCLLLTLIFA
CCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHH
AASPALAFNPDEVLKDPVLEQRARNLTSQLRCMVCQNQSIDDSNAELARDLRVLVRERLV
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
QGDSDKAVIDYVVSRYGEFVLLKPRLSLRTLLLWGAPIGLTLAGIFAVFVFSRRRATQER
CCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
PQKLSADEEERIRNLIEK
HHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]