Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 159184553
Identifier: 159184553
GI number: 159184553
Start: 948711
End: 949817
Strand: Reverse
Name: 159184553
Synonym: Atu0960
Alternate gene names: NA
Gene position: 949817-948711 (Counterclockwise)
Preceding gene: 159184554
Following gene: 159184551
Centisome position: 33.43
GC content: 60.34
Gene sequence:
>1107_bases ATGCTGGCCATTCTTGGTCCACGGATCGGCAGCGAGCTGCACCTCTCCAATGAAGTCGTTTTTTTGGGTCTCACCGTCAT GATGACGATCAGCGCGCTCTGCGGTCCGCTGCTTGGACGCATGCTCGTGCGACACGGCGCAGCCCCCGTGCTGGTGACAG GCACCATTCTCTTTGCGGCTGGCTTCGGCTTGCTTGCCTCTGCGGGCGGCGTAGTGAGCTATCTTCTCGGCTGGGCCGTG ATGGGGCTTGCGGGAACATGCGGGTTGACGACGGCGGCCCATACGGCGGTGGTGGAACGCGTCGGGGCGGAAAGCCGCCG TTCGCTGACGTTGCTCATGGTGTTCACCGGCCTTTCGGGCGCTGTTTTTCTGCCTTTCACCGCCTTTGCAGACCAGCATC TTGGCTGGCGCGGCACCCTAATCTTTTACGGCTGTTTTCAGCTTTTCGTGCTTCTGCCGCTTTACCTTTTCGTTCTTCCG CAAAGAACGGCACCCAATACCGACCACAGCTTGAAAACCGCAGATGCCCCAAAGGTGCCAGTCGATACGCGTCGCGCATT TTTACTTCTGGCAGCGATGACGACGCTCAGCGCCTTCACCGCCTTTGGCCTCTCACCGCTCCTGCCGTTGCTGCTGGTTC ATTCCGGCGCTTCGCAAGCCCTTGCCATCCAGCTGGCGTCAGTACGCAGCGTGCTTGCCATAACGGCACGCGGGCTGGAT TTCCTGCTCGGGAAACGCGGCAATCCCTTTGTCACCTGCATGATCGGCCTCTGTCTGCTGCTCGTTTCTTTCGTGCTGCT GATTGGCTTTTCGCCGGCCATGCCTGCCTTCATCGGCTTCATCGCCTTTTTCGGCTTTGGTGCGGGTGTGCTGACGGTCA GCCGCGCCGTGCTGCCGCTTGCGGTGTTTTCCCCCACACAATATGGCCTTCAGGCTGCCCGCATCTCGCTTCCGCAAAAT CTGGCCATTGCCGTTGCGCCGGTCATTTTCACCATGGCACTGGATCGCGGCGGCGTGGGCGCCATGCTGGGCATCGCCTC CATTCTGATCGGCCTTTCCGTGCTGCTGTTGATTCTGTTATGGAGAACAGTCAGACAGGGGGCCTGA
Upstream 100 bases:
>100_bases CGATCTTGCCATGTCCGATGCTGCCTCCCTGACGTCCCGTACACGCCTTATCGGCGTGCTGGCGCTCGGACAGGTGCTCA GCTGGGGTTCGGGTTTCGAC
Downstream 100 bases:
>100_bases CGCAACGCTATTCCGTCACGGCCCTGAAACGCATCTCCGAAACAAAGTTCCGGGTCTTCGTCTCGCGCCGCGAGCGGCTT GATAGAAGCTGCAGATTGAC
Product: MFS permease
Products: NA
Alternate protein names: MFS Permease; Transporter Permease Protein; Transport Protein Transmembrane; Facilitator Superfamily Protein; Facilitator Superfamily MFS_1 Domain-Containing Protein; MFS Family Permease
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MLAILGPRIGSELHLSNEVVFLGLTVMMTISALCGPLLGRMLVRHGAAPVLVTGTILFAAGFGLLASAGGVVSYLLGWAV MGLAGTCGLTTAAHTAVVERVGAESRRSLTLLMVFTGLSGAVFLPFTAFADQHLGWRGTLIFYGCFQLFVLLPLYLFVLP QRTAPNTDHSLKTADAPKVPVDTRRAFLLLAAMTTLSAFTAFGLSPLLPLLLVHSGASQALAIQLASVRSVLAITARGLD FLLGKRGNPFVTCMIGLCLLLVSFVLLIGFSPAMPAFIGFIAFFGFGAGVLTVSRAVLPLAVFSPTQYGLQAARISLPQN LAIAVAPVIFTMALDRGGVGAMLGIASILIGLSVLLLILLWRTVRQGA
Sequences:
>Translated_368_residues MLAILGPRIGSELHLSNEVVFLGLTVMMTISALCGPLLGRMLVRHGAAPVLVTGTILFAAGFGLLASAGGVVSYLLGWAV MGLAGTCGLTTAAHTAVVERVGAESRRSLTLLMVFTGLSGAVFLPFTAFADQHLGWRGTLIFYGCFQLFVLLPLYLFVLP QRTAPNTDHSLKTADAPKVPVDTRRAFLLLAAMTTLSAFTAFGLSPLLPLLLVHSGASQALAIQLASVRSVLAITARGLD FLLGKRGNPFVTCMIGLCLLLVSFVLLIGFSPAMPAFIGFIAFFGFGAGVLTVSRAVLPLAVFSPTQYGLQAARISLPQN LAIAVAPVIFTMALDRGGVGAMLGIASILIGLSVLLLILLWRTVRQGA >Mature_368_residues MLAILGPRIGSELHLSNEVVFLGLTVMMTISALCGPLLGRMLVRHGAAPVLVTGTILFAAGFGLLASAGGVVSYLLGWAV MGLAGTCGLTTAAHTAVVERVGAESRRSLTLLMVFTGLSGAVFLPFTAFADQHLGWRGTLIFYGCFQLFVLLPLYLFVLP QRTAPNTDHSLKTADAPKVPVDTRRAFLLLAAMTTLSAFTAFGLSPLLPLLLVHSGASQALAIQLASVRSVLAITARGLD FLLGKRGNPFVTCMIGLCLLLVSFVLLIGFSPAMPAFIGFIAFFGFGAGVLTVSRAVLPLAVFSPTQYGLQAARISLPQN LAIAVAPVIFTMALDRGGVGAMLGIASILIGLSVLLLILLWRTVRQGA
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38506; Mature: 38506
Theoretical pI: Translated: 10.76; Mature: 10.76
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAILGPRIGSELHLSNEVVFLGLTVMMTISALCGPLLGRMLVRHGAAPVLVTGTILFAA CEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH GFGLLASAGGVVSYLLGWAVMGLAGTCGLTTAAHTAVVERVGAESRRSLTLLMVFTGLSG HHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC AVFLPFTAFADQHLGWRGTLIFYGCFQLFVLLPLYLFVLPQRTAPNTDHSLKTADAPKVP CEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC VDTRRAFLLLAAMTTLSAFTAFGLSPLLPLLLVHSGASQALAIQLASVRSVLAITARGLD CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHH FLLGKRGNPFVTCMIGLCLLLVSFVLLIGFSPAMPAFIGFIAFFGFGAGVLTVSRAVLPL HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH AVFSPTQYGLQAARISLPQNLAIAVAPVIFTMALDRGGVGAMLGIASILIGLSVLLLILL HHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH WRTVRQGA HHHHHCCC >Mature Secondary Structure MLAILGPRIGSELHLSNEVVFLGLTVMMTISALCGPLLGRMLVRHGAAPVLVTGTILFAA CEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH GFGLLASAGGVVSYLLGWAVMGLAGTCGLTTAAHTAVVERVGAESRRSLTLLMVFTGLSG HHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC AVFLPFTAFADQHLGWRGTLIFYGCFQLFVLLPLYLFVLPQRTAPNTDHSLKTADAPKVP CEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC VDTRRAFLLLAAMTTLSAFTAFGLSPLLPLLLVHSGASQALAIQLASVRSVLAITARGLD CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHH FLLGKRGNPFVTCMIGLCLLLVSFVLLIGFSPAMPAFIGFIAFFGFGAGVLTVSRAVLPL HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH AVFSPTQYGLQAARISLPQNLAIAVAPVIFTMALDRGGVGAMLGIASILIGLSVLLLILL HHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH WRTVRQGA HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA