Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184516
Identifier: 159184516
GI number: 159184516
Start: 878210
End: 878920
Strand: Direct
Name: 159184516
Synonym: Atu0884
Alternate gene names: NA
Gene position: 878210-878920 (Clockwise)
Preceding gene: 159184515
Following gene: 15888225
Centisome position: 30.91
GC content: 65.12
Gene sequence:
>711_bases ATGTCATTTTTTCGCAATATCGTCTTCACCGCCATTCTCGTCGGCATTCTCGGCGGTTTCGCCGTGTCTGCCATGCAGGC TTTTGGCACCACGCCGCTTATCCTGCAGGCGGAAACCTTTGAAAGCGCCGGCGAAGCGCCCCACAGCCATGATGCACCGG CACCCGGTGCTGCCGTTCCCGCCCATGAGCACAATGACGAGGCCTGGGCTCCGGCCGATGGTTTCGAGCGCACGGCCTAT ACCGTCGCCGCCAATGTGCTGACCGCCATCGGCTACGCGCTGGTGCTGACGGGCCTCATTTCGCTGCGTGGCACCAATAC CGGCTGGCGTGAGGGGCTTCTCTGGGGCGTCGCCGGCTTTGCCGCCGTTATGCTCGCCCCGATGATCGGCCTGCCGCCGG AACTGCCGGGAAGCCCGGCCGCCGCACTTGAGGCGCGGCAGATCTGGTGGCTCGCGACCGTCGCCGCAACCGCAGGCGGC ATTGCGTTGATCGCCTTCCGCCGCGAACCTTGGGCGGTGCTTTTGGCGCTGGTGTTGATCGTCGCGCCGCATGTGATCGG CGCACCCCTGCCGCCGGAAGGCGAACACGCGCTGGCACCGTTGCCGCTGGAGCGTCAGTTCATCGTCGCCGCCACCATCA CCAGCTTCGTCTTCTGGGCGCTAATCGGCACGTTGAGCGCGTTTTTCCTGAAGCGTTTCCAGCAGGCATAA
Upstream 100 bases:
>100_bases TCGTCGGTTTTGTCGGCTTTTCCCATGTGGAAGCCGTTCACAATGCCGCGCATGATACGCGCCATGCCAATGCCTTCCCC TGCCATTGAGGGGAAACGGC
Downstream 100 bases:
>100_bases GCCCATGCAGGACGCAGCGGAGTGGAGTGAGGAACTCGATGCGCTGCGTTTTGCCGTTCCCGGTCACGGTGCGCCTTGCG CCGTGCACCGCCTTGCCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: Integral Membrane Protein; Cobalt Transporter Subunit
Number of amino acids: Translated: 236; Mature: 235
Protein sequence:
>236_residues MSFFRNIVFTAILVGILGGFAVSAMQAFGTTPLILQAETFESAGEAPHSHDAPAPGAAVPAHEHNDEAWAPADGFERTAY TVAANVLTAIGYALVLTGLISLRGTNTGWREGLLWGVAGFAAVMLAPMIGLPPELPGSPAAALEARQIWWLATVAATAGG IALIAFRREPWAVLLALVLIVAPHVIGAPLPPEGEHALAPLPLERQFIVAATITSFVFWALIGTLSAFFLKRFQQA
Sequences:
>Translated_236_residues MSFFRNIVFTAILVGILGGFAVSAMQAFGTTPLILQAETFESAGEAPHSHDAPAPGAAVPAHEHNDEAWAPADGFERTAY TVAANVLTAIGYALVLTGLISLRGTNTGWREGLLWGVAGFAAVMLAPMIGLPPELPGSPAAALEARQIWWLATVAATAGG IALIAFRREPWAVLLALVLIVAPHVIGAPLPPEGEHALAPLPLERQFIVAATITSFVFWALIGTLSAFFLKRFQQA >Mature_235_residues SFFRNIVFTAILVGILGGFAVSAMQAFGTTPLILQAETFESAGEAPHSHDAPAPGAAVPAHEHNDEAWAPADGFERTAYT VAANVLTAIGYALVLTGLISLRGTNTGWREGLLWGVAGFAAVMLAPMIGLPPELPGSPAAALEARQIWWLATVAATAGGI ALIAFRREPWAVLLALVLIVAPHVIGAPLPPEGEHALAPLPLERQFIVAATITSFVFWALIGTLSAFFLKRFQQA
Specific function: Unknown
COG id: COG5446
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24796; Mature: 24665
Theoretical pI: Translated: 5.52; Mature: 5.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFFRNIVFTAILVGILGGFAVSAMQAFGTTPLILQAETFESAGEAPHSHDAPAPGAAVP CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCC AHEHNDEAWAPADGFERTAYTVAANVLTAIGYALVLTGLISLRGTNTGWREGLLWGVAGF CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH AAVMLAPMIGLPPELPGSPAAALEARQIWWLATVAATAGGIALIAFRREPWAVLLALVLI HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH VAPHVIGAPLPPEGEHALAPLPLERQFIVAATITSFVFWALIGTLSAFFLKRFQQA HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SFFRNIVFTAILVGILGGFAVSAMQAFGTTPLILQAETFESAGEAPHSHDAPAPGAAVP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCC AHEHNDEAWAPADGFERTAYTVAANVLTAIGYALVLTGLISLRGTNTGWREGLLWGVAGF CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH AAVMLAPMIGLPPELPGSPAAALEARQIWWLATVAATAGGIALIAFRREPWAVLLALVLI HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH VAPHVIGAPLPPEGEHALAPLPLERQFIVAATITSFVFWALIGTLSAFFLKRFQQA HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA