Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184461
Identifier: 159184461
GI number: 159184461
Start: 772779
End: 775319
Strand: Reverse
Name: 159184461
Synonym: Atu0778
Alternate gene names: NA
Gene position: 775319-772779 (Counterclockwise)
Preceding gene: 15888122
Following gene: 15888109
Centisome position: 27.28
GC content: 58.52
Gene sequence:
>2541_bases ATGCGCAGCAACACGTCAACAATCTTCCAGCCTCACTCGATTTTCGTTTCACACAAAAACTTGATCGGAGCCTTAGCGCT GAACGCCCCGGTGCCGCGCCGCCCTGCGGCTCAGTCGTCGCGCCTGATGACGGGCTGGCTATCCCCGAAACCTCTGACAT TTCTCTTCACCGTTCCAATGTTACTCGGACTGAACTGTGTCGCCACAGCAGGTGACATTCCGGGCTTCCCCTACGTTCGC TGGCTCGAAGGAGCAGGAACGAATTTCGTCAACGGCATCAGCGGAGACGGGTCTGTCGCGGTCGGATATTCGATTTCCAG CAATGGCCCGCGACCTTTTCGCTGGGAGGCGGCGACGGGAACGCTGCGCTATATAGATGGTGGGATTGAAGCAAATGGTG GCCGCCCCGAGAAGACAAATGTGGACGGCTCCGTGATCGTGGGCACCTCCAGTAGCGACCAGGCGTTCCGCTGGACCGCG AGAACCGGAATGAGGACACTTGGCACCCTACAGGGGATCGGCAAATCCTCCGCCACGGGCGTGAGTGGCGATGGGTCGAT CATCATTGGTGTATCCGAAAATGCTGATGTGCAGCGAGCATTTCGCTGGTCAGCGGCCACCGGTGTCATGACAGCGATTG ACATGCCCGCGGATGTAACCTCTTCCGTTGCCAATGACGTCAGCCTCGATGGAAGAGTTGTTGTCGGGGAATACTTTACC GCGGCGAACGTGCACGCCTTTCGTTGGACCGCAACAGATGGTGCTGTCGATATCGGAACACTTCCCGGTTCGTACGGTGC GCGTGCGTTAGCGACCAATACGGACGGCACGATTGTCGCGGGGGTCTCCAGATTCGTCGTGCAAGTGCCGATCGAAGTGT TGGAGGACAGGGCGGGAAAGTTCGACGGAACTGACATCAAAGACGGTCCCGTCAACCCCGACGTCAAAATGTTCATTGAT GAATGGCATGCCTTCCGATGGAACGCTGCCACTGGATCAATGCAGCCGCTTGAGGTAATTCCGAACGGAAGTGGCTCTAT ACCCTATGCCATGAGCGCGGACGGTTCGGTCATTGTCGGGAATTGGCAATCCGCCAGCGGTCAGCGCGGCTTCCGCTGGA CCGAACCTGGCGGAATGCTGTCCGTTGAGGACTGGTTGCGGAACAATGGTGTCCCTATCGCCAGCGACTTCACAAGTACC GCTACGGACGTAAGCGCCGATGGCAACATCGTTGTGGGCCGAACAAGAAATAACACATCTTACATCGCCCGAATCGTGCT TGCTGTCTCCGCCACAGCGGACCCGCGCACCAATCTTGACAATGTGGATACGGTGACACCTGCAGATCCCCGAAGTAGCG GAAGACAACCGCGAGGAATCGATCCCACCAATAGAGCGGTAACCTCAACTACTCCTTCGGCATCGTCCGGCACCACCTCC TCCTCTCCATCATCTACCTCATCTGCATCCGCCTCGCCCTCCGGCTCTTCCAATACTTCCACATCGCCCGCAACCACGAC ATCTGGCGCAGCGTCGACACCTACTGCATCTTCTGTTTCCTCACCCGGTTCCGCCGCCAAAACTGGCCATTCCATCCTTC CTGCGCGTTCGGGCATCATCGATCTGGATCAATATGCGGGGACGATTGCAGCAAGGCCGAATGCGGGTGTCGGCCTCAAC ATTGCCAATATCGTTCTCGACGGCGCGCATGGCATGCCGATGCGCAGCCTGCTGGAGCCGGGCCGTCAATCTTTTTCCAT CGTCAGCGATGTTGGTCACAATGACGGCCGCGATGCGGCTGGCGCTTTTGGTATTGCCGATATCGGTTATGGTTTCGGGC TCGACGGTGGCGCGACGGCGCGCATCGCCTTTGGCGGCCTTTACGACCAACGCGATATCAATACCGGCGGAGACTTCATC CACAGCGGCTTCTACATCGCTCCCGAGATCAGCCTGCCGCTCACTGATGGCCTTTATGCCACCATTGGCGGTTATTATGC ACCCGGCAGAATGTCGATCGAGCGGGGTTACCTCAATGGCGGCACGATGGATTATTCGCGCGGCGAGACCGATCTCAATG TCTGGGCAGCGAAACTGCGCTTTGACTGGCTGGATGCGCTCACAATCGGCGAATGGAACCTGACACCCTATGCCGGCGTG ACCTATGCAAAAGCCGAGATGGGCGCTTATGCGGAAACCGGCGGGGCGTTTCCGGCCGGTTTCGATGCGAGCGGCGAGCA ATCCACCATCATTCGCGCGGGTCTCGACGGCGTCACCAATTTCAGCGACTCGATCCGCTTTCTGGCAAGGGCCGAGGCGG CCTACCGGCTGGAAAAGAAAACAGCAACAACTACGGGCACCATTGATGACTTGATGGGGTTTTCCTTCGCCGGGCAGGAT ATAGACCGCTTCTGGCTGCGCGGTGGCCTCGGCGCGGAATTCGATATAGCGGGCGGGACGGCATCACTGAACGTCAACGT CACCACCGAGGGCAACGATCCCGGCCTATGGGTTCGGGCCGGCTGGAAGATCACTTTCTGA
Upstream 100 bases:
>100_bases CAAATGGGCATGATGCGCCATCCACAAAATATTCCAGCCCTTAGTCCGCTGAACCCTGTCTAGGTTCGTCACAGGGTACG ACACCGGAGAAAGGGTGGGT
Downstream 100 bases:
>100_bases CCGGCAACCAGCCTTTACACATTCATGTCGAACACCAGAAGCCCGGCGAGGCCGCCATCGGTCAGCGACACCAACCGTTC CCCCACTTCCACATGCTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: Autotransporter Beta-Domain-Containing Protein; Extracellular Repeat Protein HAF Family; Extracellular Repeat HAF Family
Number of amino acids: Translated: 846; Mature: 846
Protein sequence:
>846_residues MRSNTSTIFQPHSIFVSHKNLIGALALNAPVPRRPAAQSSRLMTGWLSPKPLTFLFTVPMLLGLNCVATAGDIPGFPYVR WLEGAGTNFVNGISGDGSVAVGYSISSNGPRPFRWEAATGTLRYIDGGIEANGGRPEKTNVDGSVIVGTSSSDQAFRWTA RTGMRTLGTLQGIGKSSATGVSGDGSIIIGVSENADVQRAFRWSAATGVMTAIDMPADVTSSVANDVSLDGRVVVGEYFT AANVHAFRWTATDGAVDIGTLPGSYGARALATNTDGTIVAGVSRFVVQVPIEVLEDRAGKFDGTDIKDGPVNPDVKMFID EWHAFRWNAATGSMQPLEVIPNGSGSIPYAMSADGSVIVGNWQSASGQRGFRWTEPGGMLSVEDWLRNNGVPIASDFTST ATDVSADGNIVVGRTRNNTSYIARIVLAVSATADPRTNLDNVDTVTPADPRSSGRQPRGIDPTNRAVTSTTPSASSGTTS SSPSSTSSASASPSGSSNTSTSPATTTSGAASTPTASSVSSPGSAAKTGHSILPARSGIIDLDQYAGTIAARPNAGVGLN IANIVLDGAHGMPMRSLLEPGRQSFSIVSDVGHNDGRDAAGAFGIADIGYGFGLDGGATARIAFGGLYDQRDINTGGDFI HSGFYIAPEISLPLTDGLYATIGGYYAPGRMSIERGYLNGGTMDYSRGETDLNVWAAKLRFDWLDALTIGEWNLTPYAGV TYAKAEMGAYAETGGAFPAGFDASGEQSTIIRAGLDGVTNFSDSIRFLARAEAAYRLEKKTATTTGTIDDLMGFSFAGQD IDRFWLRGGLGAEFDIAGGTASLNVNVTTEGNDPGLWVRAGWKITF
Sequences:
>Translated_846_residues MRSNTSTIFQPHSIFVSHKNLIGALALNAPVPRRPAAQSSRLMTGWLSPKPLTFLFTVPMLLGLNCVATAGDIPGFPYVR WLEGAGTNFVNGISGDGSVAVGYSISSNGPRPFRWEAATGTLRYIDGGIEANGGRPEKTNVDGSVIVGTSSSDQAFRWTA RTGMRTLGTLQGIGKSSATGVSGDGSIIIGVSENADVQRAFRWSAATGVMTAIDMPADVTSSVANDVSLDGRVVVGEYFT AANVHAFRWTATDGAVDIGTLPGSYGARALATNTDGTIVAGVSRFVVQVPIEVLEDRAGKFDGTDIKDGPVNPDVKMFID EWHAFRWNAATGSMQPLEVIPNGSGSIPYAMSADGSVIVGNWQSASGQRGFRWTEPGGMLSVEDWLRNNGVPIASDFTST ATDVSADGNIVVGRTRNNTSYIARIVLAVSATADPRTNLDNVDTVTPADPRSSGRQPRGIDPTNRAVTSTTPSASSGTTS SSPSSTSSASASPSGSSNTSTSPATTTSGAASTPTASSVSSPGSAAKTGHSILPARSGIIDLDQYAGTIAARPNAGVGLN IANIVLDGAHGMPMRSLLEPGRQSFSIVSDVGHNDGRDAAGAFGIADIGYGFGLDGGATARIAFGGLYDQRDINTGGDFI HSGFYIAPEISLPLTDGLYATIGGYYAPGRMSIERGYLNGGTMDYSRGETDLNVWAAKLRFDWLDALTIGEWNLTPYAGV TYAKAEMGAYAETGGAFPAGFDASGEQSTIIRAGLDGVTNFSDSIRFLARAEAAYRLEKKTATTTGTIDDLMGFSFAGQD IDRFWLRGGLGAEFDIAGGTASLNVNVTTEGNDPGLWVRAGWKITF >Mature_846_residues MRSNTSTIFQPHSIFVSHKNLIGALALNAPVPRRPAAQSSRLMTGWLSPKPLTFLFTVPMLLGLNCVATAGDIPGFPYVR WLEGAGTNFVNGISGDGSVAVGYSISSNGPRPFRWEAATGTLRYIDGGIEANGGRPEKTNVDGSVIVGTSSSDQAFRWTA RTGMRTLGTLQGIGKSSATGVSGDGSIIIGVSENADVQRAFRWSAATGVMTAIDMPADVTSSVANDVSLDGRVVVGEYFT AANVHAFRWTATDGAVDIGTLPGSYGARALATNTDGTIVAGVSRFVVQVPIEVLEDRAGKFDGTDIKDGPVNPDVKMFID EWHAFRWNAATGSMQPLEVIPNGSGSIPYAMSADGSVIVGNWQSASGQRGFRWTEPGGMLSVEDWLRNNGVPIASDFTST ATDVSADGNIVVGRTRNNTSYIARIVLAVSATADPRTNLDNVDTVTPADPRSSGRQPRGIDPTNRAVTSTTPSASSGTTS SSPSSTSSASASPSGSSNTSTSPATTTSGAASTPTASSVSSPGSAAKTGHSILPARSGIIDLDQYAGTIAARPNAGVGLN IANIVLDGAHGMPMRSLLEPGRQSFSIVSDVGHNDGRDAAGAFGIADIGYGFGLDGGATARIAFGGLYDQRDINTGGDFI HSGFYIAPEISLPLTDGLYATIGGYYAPGRMSIERGYLNGGTMDYSRGETDLNVWAAKLRFDWLDALTIGEWNLTPYAGV TYAKAEMGAYAETGGAFPAGFDASGEQSTIIRAGLDGVTNFSDSIRFLARAEAAYRLEKKTATTTGTIDDLMGFSFAGQD IDRFWLRGGLGAEFDIAGGTASLNVNVTTEGNDPGLWVRAGWKITF
Specific function: Unknown
COG id: COG5563
COG function: function code S; Predicted integral membrane proteins containing uncharacterized repeats
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88108; Mature: 88108
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSNTSTIFQPHSIFVSHKNLIGALALNAPVPRRPAAQSSRLMTGWLSPKPLTFLFTVPM CCCCCCEEEECCEEEEECCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHH LLGLNCVATAGDIPGFPYVRWLEGAGTNFVNGISGDGSVAVGYSISSNGPRPFRWEAATG HHCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCC TLRYIDGGIEANGGRPEKTNVDGSVIVGTSSSDQAFRWTARTGMRTLGTLQGIGKSSATG EEEEEECCEECCCCCCCCCCCCCEEEEECCCCCCEEEEEHHHCHHHHHHHHCCCCCCCCC VSGDGSIIIGVSENADVQRAFRWSAATGVMTAIDMPADVTSSVANDVSLDGRVVVGEYFT CCCCCCEEEEECCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHCCCCCCCEEEEEEEEC AANVHAFRWTATDGAVDIGTLPGSYGARALATNTDGTIVAGVSRFVVQVPIEVLEDRAGK CCCEEEEEEECCCCCEEECCCCCCCCCEEEEECCCCEEEEHHHHHHHHCCHHHHHHCCCC FDGTDIKDGPVNPDVKMFIDEWHAFRWNAATGSMQPLEVIPNGSGSIPYAMSADGSVIVG CCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCEEEECCCCCCCCEEECCCCCEEEE NWQSASGQRGFRWTEPGGMLSVEDWLRNNGVPIASDFTSTATDVSADGNIVVGRTRNNTS CCCCCCCCCCCEECCCCCEEEHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEECCCCHH YIARIVLAVSATADPRTNLDNVDTVTPADPRSSGRQPRGIDPTNRAVTSTTPSASSGTTS HHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC SSPSSTSSASASPSGSSNTSTSPATTTSGAASTPTASSVSSPGSAAKTGHSILPARSGII CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCE DLDQYAGTIAARPNAGVGLNIANIVLDGAHGMPMRSLLEPGRQSFSIVSDVGHNDGRDAA EHHHHCCEEEECCCCCCCEEEEEEEEECCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCC GAFGIADIGYGFGLDGGATARIAFGGLYDQRDINTGGDFIHSGFYIAPEISLPLTDGLYA CCCCCHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCEEEEEEECCCCCCCHHH TIGGYYAPGRMSIERGYLNGGTMDYSRGETDLNVWAAKLRFDWLDALTIGEWNLTPYAGV HCCCEECCCCEEEEECCCCCCEEECCCCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCC TYAKAEMGAYAETGGAFPAGFDASGEQSTIIRAGLDGVTNFSDSIRFLARAEAAYRLEKK EEEHHHHCCHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH TATTTGTIDDLMGFSFAGQDIDRFWLRGGLGAEFDIAGGTASLNVNVTTEGNDPGLWVRA CCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCEEEECCCEEEEEEEEEECCCCCCEEEEE GWKITF CCEEEC >Mature Secondary Structure MRSNTSTIFQPHSIFVSHKNLIGALALNAPVPRRPAAQSSRLMTGWLSPKPLTFLFTVPM CCCCCCEEEECCEEEEECCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHH LLGLNCVATAGDIPGFPYVRWLEGAGTNFVNGISGDGSVAVGYSISSNGPRPFRWEAATG HHCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCC TLRYIDGGIEANGGRPEKTNVDGSVIVGTSSSDQAFRWTARTGMRTLGTLQGIGKSSATG EEEEEECCEECCCCCCCCCCCCCEEEEECCCCCCEEEEEHHHCHHHHHHHHCCCCCCCCC VSGDGSIIIGVSENADVQRAFRWSAATGVMTAIDMPADVTSSVANDVSLDGRVVVGEYFT CCCCCCEEEEECCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHCCCCCCCEEEEEEEEC AANVHAFRWTATDGAVDIGTLPGSYGARALATNTDGTIVAGVSRFVVQVPIEVLEDRAGK CCCEEEEEEECCCCCEEECCCCCCCCCEEEEECCCCEEEEHHHHHHHHCCHHHHHHCCCC FDGTDIKDGPVNPDVKMFIDEWHAFRWNAATGSMQPLEVIPNGSGSIPYAMSADGSVIVG CCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCEEEECCCCCCCCEEECCCCCEEEE NWQSASGQRGFRWTEPGGMLSVEDWLRNNGVPIASDFTSTATDVSADGNIVVGRTRNNTS CCCCCCCCCCCEECCCCCEEEHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEECCCCHH YIARIVLAVSATADPRTNLDNVDTVTPADPRSSGRQPRGIDPTNRAVTSTTPSASSGTTS HHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC SSPSSTSSASASPSGSSNTSTSPATTTSGAASTPTASSVSSPGSAAKTGHSILPARSGII CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCE DLDQYAGTIAARPNAGVGLNIANIVLDGAHGMPMRSLLEPGRQSFSIVSDVGHNDGRDAA EHHHHCCEEEECCCCCCCEEEEEEEEECCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCC GAFGIADIGYGFGLDGGATARIAFGGLYDQRDINTGGDFIHSGFYIAPEISLPLTDGLYA CCCCCHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCEEEEEEECCCCCCCHHH TIGGYYAPGRMSIERGYLNGGTMDYSRGETDLNVWAAKLRFDWLDALTIGEWNLTPYAGV HCCCEECCCCEEEEECCCCCCEEECCCCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCC TYAKAEMGAYAETGGAFPAGFDASGEQSTIIRAGLDGVTNFSDSIRFLARAEAAYRLEKK EEEHHHHCCHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH TATTTGTIDDLMGFSFAGQDIDRFWLRGGLGAEFDIAGGTASLNVNVTTEGNDPGLWVRA CCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCEEEECCCEEEEEEEEEECCCCCCEEEEE GWKITF CCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA