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The map label for this gene is xseB

Identifier: 159184448

GI number: 159184448

Start: 745930

End: 746184

Strand: Reverse

Name: xseB

Synonym: Atu0747

Alternate gene names: 159184448

Gene position: 746184-745930 (Counterclockwise)

Preceding gene: 15888091

Following gene: 15888089

Centisome position: 26.26

GC content: 60.0

Gene sequence:

>255_bases
ATGACGGAAAATGCCAACACAGCCGATGTCAGCGGTTATTCTTTCGAAAAAGCCGTCGCCGAGCTGGAAAGCATTGTCGC
ACGTCTGGAACGCGGCGACGTGGCGCTGGACGAATCCATCGCCATCTACGAGCGCGGCGAAGCCCTGAAGAAACATTGCG
AAACGCTGCTGAACGCCGCCGAGAAGCGGATCGAGAAAATCCGTCTCGATCGTGCGGGCAAGCCGCAGGGCGTGGAGCCG
CTGGACGGGGAGTGA

Upstream 100 bases:

>100_bases
CCTCCAACCGGGTCGTCAGCCTGCTGGAAGGTGGTTATGATCTGGAAGGGCTGGCGGAATCGGCAGCCATGCATATTTTG
AGAATGATGAAGGGTTGAAC

Downstream 100 bases:

>100_bases
CTGGCCCTTCCCTCATTCCTGTGCCTGTCACAGGAATCTAGCCAGACCAAGTCCTTGGGCTGAAAAGACTCTTCCCGCCG
CGCAGACGCGCGTCGGCTGG

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 84; Mature: 83

Protein sequence:

>84_residues
MTENANTADVSGYSFEKAVAELESIVARLERGDVALDESIAIYERGEALKKHCETLLNAAEKRIEKIRLDRAGKPQGVEP
LDGE

Sequences:

>Translated_84_residues
MTENANTADVSGYSFEKAVAELESIVARLERGDVALDESIAIYERGEALKKHCETLLNAAEKRIEKIRLDRAGKPQGVEP
LDGE
>Mature_83_residues
TENANTADVSGYSFEKAVAELESIVARLERGDVALDESIAIYERGEALKKHCETLLNAAEKRIEKIRLDRAGKPQGVEPL
DGE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_AGRT5 (Q8UHD5)

Other databases:

- EMBL:   AE007869
- PIR:   AE2668
- PIR:   C97450
- RefSeq:   NP_353771.2
- ProteinModelPortal:   Q8UHD5
- SMR:   Q8UHD5
- STRING:   Q8UHD5
- GeneID:   1132785
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu0747
- eggNOG:   COG1722
- HOGENOM:   HBG728416
- OMA:   ENANTAD
- ProtClustDB:   PRK00977
- BioCyc:   ATUM176299-1:ATU0747-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 9230; Mature: 9099

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTENANTADVSGYSFEKAVAELESIVARLERGDVALDESIAIYERGEALKKHCETLLNAA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
EKRIEKIRLDRAGKPQGVEPLDGE
HHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TENANTADVSGYSFEKAVAELESIVARLERGDVALDESIAIYERGEALKKHCETLLNAA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
EKRIEKIRLDRAGKPQGVEPLDGE
HHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194