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The map label for this gene is ndoB [H]

Identifier: 159184440

GI number: 159184440

Start: 726173

End: 727417

Strand: Direct

Name: ndoB [H]

Synonym: Atu0726

Alternate gene names: 159184440

Gene position: 726173-727417 (Clockwise)

Preceding gene: 159184437

Following gene: 159184441

Centisome position: 25.56

GC content: 61.69

Gene sequence:

>1245_bases
ATGGAATTGCGTGACACCGTATTGCGCCAGCTAAAAAACCGCCGCGAAGGCTTCAGCCTGGAGCAGCCGTTCTACACGGA
CCCGGATTATTTCAAGCTGGATATGGAGACGATCTGGTATCGCGACTGGCTGTTCGTCGGCCATGATTGCGAGGTGCCCA
AGTCCGGCAACTACATGACCGTTCAGGTCGGCGCATACTCGGTCGTCATCGTTCGCGGACGCGACGGGCAGATCCGCGCC
CTGCAAAATTCCTGCCGCCATCGCGGTTCGCGCGTCTGCAGCGCGCAGAAGGGCCAGGCCGCCCGTCTCGTCTGTCCCTA
TCACCAGTGGACCTATGATCTGGATGGCAAGCTGCTGTTCGCACGCCATATGGGCGAGGAATTCGACAAGGCGGAATTTG
GCCTGAAGCCGGTCGCCTGCGAGACCGTTGCCGGTTACGTCTTCATCTGCCTTGCCGACCAGCCCGCCGATTTCGCGCCG
ATGCGCGCCGAGGTCGAAAGCTACATGGCCCCGCACCGCATCTGGGAAGCCAAGGTCGCGCATGAAAGCACCATCATCGA
AAAGGGCAACTGGAAGCTCGTCTGGGAAAACAACCGCGAGTGCTACCATTGCGCCGCCAACCACCCCGAACTCTGCCGCA
CCTATCCCGAAAACCCGAGCGTGACGGGAACGGATGGCGGCGCGAGCGATCCCGAGATCGGCGGTCACTGGGCGCGCTGC
GAGGCGGCCGGCCTGCCGAGCCGCTTCAAGATCGATCCGAAGGGCCAGTTCCGTGTTGCCCGGATGCCGCTGATCGGCGA
GGCGGAAAGCTACACCATGTCGGGCAAACGCGCCGTGCGCCGGCCGCTGTCGGAGGATGTCAGCATCAGCCATATCGGCG
CGCTGCTTCTGTTCCACTACCCGACGACCTGGAACCATTTCCTCGGCGACCACACTATTTCTTTCCGGGTGCTGCCGCTC
AACGCCAACGAGACCATGGTCACCACCAAATGGCTGGTGCACAAGGATGCCGTCGAAGGCGTGGATTACGATCTCGAAGA
CCTCACCCACGTCTGGAACGAGACCAACGACCAGGACCGTCGCATCGTCGAGGAAAATGCCTTCGGCATTCGCTCGCCGG
CCTATCAGCCCGGTCCCTATTCCATGGAAGACGAAGGTGGCGTGATGCAGTTCGTCAACTGGTATTCCGATTTCATGGTC
GATCGCCTCTCCGGCGACAAGGCCCGGCTCTCGGCCGTAGCGTGA

Upstream 100 bases:

>100_bases
TGTTTGTGCTGCCGCAAATGACCGCCGGTGTTTAGATGAGGACATGCTTCCGCAACCCCGCAAATGGTGCCGGGCGGGCG
GTTTGATCGAGGATTTGGCC

Downstream 100 bases:

>100_bases
TGCGAAGATGAATATGGTTGTGACCTACAAGCACATAGACGAGATGAAGCCGTGGAGCGACAAGCTCCAGCTGCTGGAAT
GCATTTCAGTGACGCCCGAG

Product: ring hydroxylating dioxygenase, alpha-subunit

Products: NA

Alternate protein names: Naphthalene 1,2-dioxygenase ISP alpha [H]

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MELRDTVLRQLKNRREGFSLEQPFYTDPDYFKLDMETIWYRDWLFVGHDCEVPKSGNYMTVQVGAYSVVIVRGRDGQIRA
LQNSCRHRGSRVCSAQKGQAARLVCPYHQWTYDLDGKLLFARHMGEEFDKAEFGLKPVACETVAGYVFICLADQPADFAP
MRAEVESYMAPHRIWEAKVAHESTIIEKGNWKLVWENNRECYHCAANHPELCRTYPENPSVTGTDGGASDPEIGGHWARC
EAAGLPSRFKIDPKGQFRVARMPLIGEAESYTMSGKRAVRRPLSEDVSISHIGALLLFHYPTTWNHFLGDHTISFRVLPL
NANETMVTTKWLVHKDAVEGVDYDLEDLTHVWNETNDQDRRIVEENAFGIRSPAYQPGPYSMEDEGGVMQFVNWYSDFMV
DRLSGDKARLSAVA

Sequences:

>Translated_414_residues
MELRDTVLRQLKNRREGFSLEQPFYTDPDYFKLDMETIWYRDWLFVGHDCEVPKSGNYMTVQVGAYSVVIVRGRDGQIRA
LQNSCRHRGSRVCSAQKGQAARLVCPYHQWTYDLDGKLLFARHMGEEFDKAEFGLKPVACETVAGYVFICLADQPADFAP
MRAEVESYMAPHRIWEAKVAHESTIIEKGNWKLVWENNRECYHCAANHPELCRTYPENPSVTGTDGGASDPEIGGHWARC
EAAGLPSRFKIDPKGQFRVARMPLIGEAESYTMSGKRAVRRPLSEDVSISHIGALLLFHYPTTWNHFLGDHTISFRVLPL
NANETMVTTKWLVHKDAVEGVDYDLEDLTHVWNETNDQDRRIVEENAFGIRSPAYQPGPYSMEDEGGVMQFVNWYSDFMV
DRLSGDKARLSAVA
>Mature_414_residues
MELRDTVLRQLKNRREGFSLEQPFYTDPDYFKLDMETIWYRDWLFVGHDCEVPKSGNYMTVQVGAYSVVIVRGRDGQIRA
LQNSCRHRGSRVCSAQKGQAARLVCPYHQWTYDLDGKLLFARHMGEEFDKAEFGLKPVACETVAGYVFICLADQPADFAP
MRAEVESYMAPHRIWEAKVAHESTIIEKGNWKLVWENNRECYHCAANHPELCRTYPENPSVTGTDGGASDPEIGGHWARC
EAAGLPSRFKIDPKGQFRVARMPLIGEAESYTMSGKRAVRRPLSEDVSISHIGALLLFHYPTTWNHFLGDHTISFRVLPL
NANETMVTTKWLVHKDAVEGVDYDLEDLTHVWNETNDQDRRIVEENAFGIRSPAYQPGPYSMEDEGGVMQFVNWYSDFMV
DRLSGDKARLSAVA

Specific function: Component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into naphthalene to form cis- naphthalene dihydrodiol [H]

COG id: COG4638

COG function: function code PR; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1788103, Length=202, Percent_Identity=34.1584158415842, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788888, Length=149, Percent_Identity=37.5838926174497, Blast_Score=108, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941
- InterPro:   IPR015881
- InterPro:   IPR015879
- InterPro:   IPR001663 [H]

Pfam domain/function: PF00355 Rieske; PF00848 Ring_hydroxyl_A [H]

EC number: =1.14.12.12 [H]

Molecular weight: Translated: 47215; Mature: 47215

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS00570 RING_HYDROXYL_ALPHA ; PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRDTVLRQLKNRREGFSLEQPFYTDPDYFKLDMETIWYRDWLFVGHDCEVPKSGNYMT
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHEEEEEEEEECCCCCCCCCCCEEE
VQVGAYSVVIVRGRDGQIRALQNSCRHRGSRVCSAQKGQAARLVCPYHQWTYDLDGKLLF
EEECCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCCEEE
ARHMGEEFDKAEFGLKPVACETVAGYVFICLADQPADFAPMRAEVESYMAPHRIWEAKVA
EHHCCCHHHHHHCCCCCHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCHHHHHHHHHH
HESTIIEKGNWKLVWENNRECYHCAANHPELCRTYPENPSVTGTDGGASDPEIGGHWARC
HCCEEEECCCEEEEEECCCCEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEE
EAAGLPSRFKIDPKGQFRVARMPLIGEAESYTMSGKRAVRRPLSEDVSISHIGALLLFHY
HHCCCCCCEEECCCCCEEEEECCCCCCCCCEEECCHHHHHCCCCCCCCHHHHEEEEEEEC
PTTWNHFLGDHTISFRVLPLNANETMVTTKWLVHKDAVEGVDYDLEDLTHVWNETNDQDR
CCCHHHHCCCCEEEEEEEEECCCCEEEEEEEEEEHHHHCCCCCCHHHHHHHHCCCCCHHH
RIVEENAFGIRSPAYQPGPYSMEDEGGVMQFVNWYSDFMVDRLSGDKARLSAVA
HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHEECC
>Mature Secondary Structure
MELRDTVLRQLKNRREGFSLEQPFYTDPDYFKLDMETIWYRDWLFVGHDCEVPKSGNYMT
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHEEEEEEEEECCCCCCCCCCCEEE
VQVGAYSVVIVRGRDGQIRALQNSCRHRGSRVCSAQKGQAARLVCPYHQWTYDLDGKLLF
EEECCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCCEEE
ARHMGEEFDKAEFGLKPVACETVAGYVFICLADQPADFAPMRAEVESYMAPHRIWEAKVA
EHHCCCHHHHHHCCCCCHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCHHHHHHHHHH
HESTIIEKGNWKLVWENNRECYHCAANHPELCRTYPENPSVTGTDGGASDPEIGGHWARC
HCCEEEECCCEEEEEECCCCEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEE
EAAGLPSRFKIDPKGQFRVARMPLIGEAESYTMSGKRAVRRPLSEDVSISHIGALLLFHY
HHCCCCCCEEECCCCCEEEEECCCCCCCCCEEECCHHHHHCCCCCCCCHHHHEEEEEEEC
PTTWNHFLGDHTISFRVLPLNANETMVTTKWLVHKDAVEGVDYDLEDLTHVWNETNDQDR
CCCHHHHCCCCEEEEEEEEECCCCEEEEEEEEEEHHHHCCCCCCHHHHHHHHCCCCCHHH
RIVEENAFGIRSPAYQPGPYSMEDEGGVMQFVNWYSDFMVDRLSGDKARLSAVA
HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA