Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184431
Identifier: 159184431
GI number: 159184431
Start: 714005
End: 715186
Strand: Direct
Name: 159184431
Synonym: Atu0712
Alternate gene names: NA
Gene position: 714005-715186 (Clockwise)
Preceding gene: 15888055
Following gene: 15888057
Centisome position: 25.13
GC content: 61.93
Gene sequence:
>1182_bases TTGCGTTCGAAAAGTGTAATGCGTCGTCGGTCCGCCATGTCCCGAGAGGGGTGGGCGTCAAAATGGACCTCGCCCGTCGT CTTCGGCCTTGCCGCCTGGCTCGTCTTTCCTTCTCTTGCCGCCCGTGCGGATCTGGCCTCGCTTCTGGCGGGGCTGGACA ATGGCGGTGAGCAATGGCGCATGGTGCTGACCGCGTCTCCGGCAGGTTCGGTGCACAATGCCTCGCTCACCTTCAATGAC GCGGCAGGCGATGCGGCGCTGCATGGCAGCGGCATGACCCTGCCAAATGGCAGCAAGGTCGCTTTCGTCACCAACAAGAA GGGTGAGGCAACGACGCCGGATAGCGAGCGTGTCAACCGCGCCGCCAAGAAAGGCCGCATCGTCGCAACCGAAATCATGC AACCGCCCAAGGCCTTCACTGCCGGTTCCGTCCTCCAACGCACGAGCATGCTGGATATCGAACCGCTGAAGCGCAAGGAC CGCACGGCCTTCGTCAAGCCGAAACGCGGCAAGGACGTCGAACTCGCCTCCTTCTATTTCCGCCGCGACGAAAAGAAGGC GGATAAGAGCGTCTCGCCGATGCTGGCGGAACTCGTCACCAACCGTACTCCGGACATTCTCGCCACGGCCTATGCGCCGG CTGCCCCCGATTTCGCCCGAGAATCGCCTTTCGACGCCATTCTCAAAAAGCCGGAGGCCGGCCGTTTCGTGCCGCAGATC AGTGCGGACGATCATGCCTGGGCGGCGACCCCGCTGCCGGCCGAAGTCTTCTCCGCAGCCGAGCAGCAGTGCCTCGCCTC CGGCATCTATTTCGAGGCACGCGGTGAATCGGTGAAAGGCCAGGCGGCGGTGGCGCAGGTCATCCTCAACCGCGTGCGCA ACCCCGCCTATCCGAAAACCATCTGCGGTGTGGTCTATCAGAACAAGGATTGGCGCAACCGCTGCCAGTTTTCCTTCGCC TGCGACAATATCAAGGACCGGGTGAATTCCGAACGTCACTGGAAAATGGCGCGCGAAGTGGCCATGGCCACCACCGCCGG CAAGATCTGGCTGACGGAAGTCGGCTCTGCGACTCATTATCATGCCGTTTATGTTCGCCCCGCCTGGGGAAAATCCATGA AGAAGGTCGGCAGGATCGGCCTGCACGTCTTTTATCGTACCTATGGTGGCGGCTGGAGCTGA
Upstream 100 bases:
>100_bases GAAGGCACCTTCCTGCGCGGCGTTAACCAAGCATCAAGGTTAATAAGAGATTCTTGAACACCTGTAGAAAATTCGGTTGT CGGTGTTCGGAGTGCTGGTT
Downstream 100 bases:
>100_bases TACCACCGCCAATTTGTCGCATTTTGCGTGTCAAAAATGCCGATTCCCTGGCGAAACATCGCCGCCAAACCGTGATTTGG CATTAAGTTATTGTTATAAA
Product: hypothetical protein
Products: NA
Alternate protein names: Cell Wall Hydrolase Family; SleB-Like Protein; Cell Wall Hydrolase; Hydrolase; Spore Cortex-Lytic; Cell Wall Hydrolase Domain Protein; Spore-Cortex-Lytic Prepeptide; Cell Wall Hydrolase Sleb; N-Acetylmuramoyl-L-Alanine Amidase; Cell Wall Hydrolase Domain-Containing Protein; Cell Wall Hydrolase Family Protein
Number of amino acids: Translated: 393; Mature: 393
Protein sequence:
>393_residues MRSKSVMRRRSAMSREGWASKWTSPVVFGLAAWLVFPSLAARADLASLLAGLDNGGEQWRMVLTASPAGSVHNASLTFND AAGDAALHGSGMTLPNGSKVAFVTNKKGEATTPDSERVNRAAKKGRIVATEIMQPPKAFTAGSVLQRTSMLDIEPLKRKD RTAFVKPKRGKDVELASFYFRRDEKKADKSVSPMLAELVTNRTPDILATAYAPAAPDFARESPFDAILKKPEAGRFVPQI SADDHAWAATPLPAEVFSAAEQQCLASGIYFEARGESVKGQAAVAQVILNRVRNPAYPKTICGVVYQNKDWRNRCQFSFA CDNIKDRVNSERHWKMAREVAMATTAGKIWLTEVGSATHYHAVYVRPAWGKSMKKVGRIGLHVFYRTYGGGWS
Sequences:
>Translated_393_residues MRSKSVMRRRSAMSREGWASKWTSPVVFGLAAWLVFPSLAARADLASLLAGLDNGGEQWRMVLTASPAGSVHNASLTFND AAGDAALHGSGMTLPNGSKVAFVTNKKGEATTPDSERVNRAAKKGRIVATEIMQPPKAFTAGSVLQRTSMLDIEPLKRKD RTAFVKPKRGKDVELASFYFRRDEKKADKSVSPMLAELVTNRTPDILATAYAPAAPDFARESPFDAILKKPEAGRFVPQI SADDHAWAATPLPAEVFSAAEQQCLASGIYFEARGESVKGQAAVAQVILNRVRNPAYPKTICGVVYQNKDWRNRCQFSFA CDNIKDRVNSERHWKMAREVAMATTAGKIWLTEVGSATHYHAVYVRPAWGKSMKKVGRIGLHVFYRTYGGGWS >Mature_393_residues MRSKSVMRRRSAMSREGWASKWTSPVVFGLAAWLVFPSLAARADLASLLAGLDNGGEQWRMVLTASPAGSVHNASLTFND AAGDAALHGSGMTLPNGSKVAFVTNKKGEATTPDSERVNRAAKKGRIVATEIMQPPKAFTAGSVLQRTSMLDIEPLKRKD RTAFVKPKRGKDVELASFYFRRDEKKADKSVSPMLAELVTNRTPDILATAYAPAAPDFARESPFDAILKKPEAGRFVPQI SADDHAWAATPLPAEVFSAAEQQCLASGIYFEARGESVKGQAAVAQVILNRVRNPAYPKTICGVVYQNKDWRNRCQFSFA CDNIKDRVNSERHWKMAREVAMATTAGKIWLTEVGSATHYHAVYVRPAWGKSMKKVGRIGLHVFYRTYGGGWS
Specific function: Unknown
COG id: COG3773
COG function: function code M; Cell wall hydrolyses involved in spore germination
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43083; Mature: 43083
Theoretical pI: Translated: 10.52; Mature: 10.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSKSVMRRRSAMSREGWASKWTSPVVFGLAAWLVFPSLAARADLASLLAGLDNGGEQWR CCCHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE MVLTASPAGSVHNASLTFNDAAGDAALHGSGMTLPNGSKVAFVTNKKGEATTPDSERVNR EEEEECCCCCCEECEEEECCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHH AAKKGRIVATEIMQPPKAFTAGSVLQRTSMLDIEPLKRKDRTAFVKPKRGKDVELASFYF HHHCCCEEEHHHCCCCCHHHHHHHHHHHCCCCCCHHCCCCCEEEECCCCCCCCHHHHHHH RRDEKKADKSVSPMLAELVTNRTPDILATAYAPAAPDFARESPFDAILKKPEAGRFVPQI HHHHHHHHCHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHCCCHHHHHCCCCCCCCCCCC SADDHAWAATPLPAEVFSAAEQQCLASGIYFEARGESVKGQAAVAQVILNRVRNPAYPKT CCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCHH ICGVVYQNKDWRNRCQFSFACDNIKDRVNSERHWKMAREVAMATTAGKIWLTEVGSATHY HHHHEECCCCHHHHCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCCEE HAVYVRPAWGKSMKKVGRIGLHVFYRTYGGGWS EEEEEECCCCHHHHHHHHHHHEEEEEECCCCCC >Mature Secondary Structure MRSKSVMRRRSAMSREGWASKWTSPVVFGLAAWLVFPSLAARADLASLLAGLDNGGEQWR CCCHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE MVLTASPAGSVHNASLTFNDAAGDAALHGSGMTLPNGSKVAFVTNKKGEATTPDSERVNR EEEEECCCCCCEECEEEECCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHH AAKKGRIVATEIMQPPKAFTAGSVLQRTSMLDIEPLKRKDRTAFVKPKRGKDVELASFYF HHHCCCEEEHHHCCCCCHHHHHHHHHHHCCCCCCHHCCCCCEEEECCCCCCCCHHHHHHH RRDEKKADKSVSPMLAELVTNRTPDILATAYAPAAPDFARESPFDAILKKPEAGRFVPQI HHHHHHHHCHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHCCCHHHHHCCCCCCCCCCCC SADDHAWAATPLPAEVFSAAEQQCLASGIYFEARGESVKGQAAVAQVILNRVRNPAYPKT CCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCHH ICGVVYQNKDWRNRCQFSFACDNIKDRVNSERHWKMAREVAMATTAGKIWLTEVGSATHY HHHHEECCCCHHHHCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCCEE HAVYVRPAWGKSMKKVGRIGLHVFYRTYGGGWS EEEEEECCCCHHHHHHHHHHHEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA