Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is mutL
Identifier: 159184423
GI number: 159184423
Start: 697138
End: 698958
Strand: Reverse
Name: mutL
Synonym: Atu0699
Alternate gene names: 159184423
Gene position: 698958-697138 (Counterclockwise)
Preceding gene: 159184424
Following gene: 159184422
Centisome position: 24.6
GC content: 63.54
Gene sequence:
>1821_bases ATGGCCATCAAGCAGCTTTCAGAAACCCTCATCAACCAGATCGCCGCCGGCGAGGTCATCGAAAGACCGTCCAGCGCCAC GAAGGAGCTTGTCGAAAACGCCATCGACGCGGGCGCTACGCGGATCGAGATCGCCACGGCGGGCGGTGGCAAGGGGCTGG TGCGGATTACCGATAACGGCTCCGGCATGTCACCCGCCGATCTGGAGCTTGCGGTCAGGCGTCATTGCACCTCGAAAATT TCTACGACGCTGGATGACATCCGCACGCTCGGATTTCGCGGCGAGGCCCTGCCCTCCATCGGCTCGGTCGCAAAGCTGAC GATCACCAGCCGGCAACAGGGGGCAGAACAGGGTTCGGTGATTTCGGTTACCGGCGGCAAGGTGTCTGACGTGCGACCGG CAGCTTCGAATGCCGGCACCATCGTCGAGGTGCGCGACCTGTTCTTCGCCACACCGGCGCGGCTGAAATTCCTGAAGACG GAACGGGCGGAAGCGGCCGCCATCACCGAAGTCGTCAAACGGATGGCGATCGCCTTTCCGCATATCCGCTTCGTGCTCTC GGGCACCGACCGTTCGACGCTCGAAATTCCCTCGACCGGCGACGACCACCTTGCCCGCATGGCGCAAATTCTCGGCGCGG AGTTCAAGGATAACGCGATCGAAATCGATGCCGGGCGCGAGGACGTGACGCTGACAGGCTTTGCCGGCGTGCCGACCTTC AACCGTGGCAACTCGTCGCATCAATATGTCTTCGTTAATGGCCGCCCGGTGCAGGACAAGCTGCTTTTATCGGCCATTCG CGGCGCCTATGCCGAGACCGTGCCGCATGGGCGCTATCCGGTCGCGGTGCTGTCCATCACGCTCGACCCTGCCTTTGTTG ATGTAAATGTGCATCCGGCGAAATCCGACGTGCGGTTTCGCGATCCCGGACTCATTCGCGGGCTGATCGTCGGCGCGATC CGCCAGGCGCTGACGCGTGACGGCGACAGGGCGGCAACGACGGGCGCCAGCCAGATGATGAACGCCTTCCGCCCCGGCTA CAGCCCGTCCGGTCTAAGACCCTCCCCCTCCGCGACATGGTCCGCCGCCACCTCGCCGTCGCGGCCGCTCGCCGTTTCCG GGGACATGCAATTTGCCGAAGCGGCGCAATCGCGCTTCTCCGACATCACCATGCCGACCGCACGGGCGGAACCTCGCGAG GCTTATGAAGCTTCCCAGAGCCCTTCGCCGGAACCGGTGCTTTATCCGCTTGGAGCGGCACGGGCGCAACTGCACGAGAA CTACATCATCGCGCAGACGGAAAACGGCCTCGTCATCGTCGACCAGCATGCCGCGCATGAGCGGCTGGTGTTCGAGGAAA TGCGCAATGCCCTGCATTCGAGGCGTCCGCCCTCACAGGTGCTGCTCATCCCTGAAATCATCGACCTGCCCGAGGAAGAT TGCGACCGGTTGATGGATCACGCAGCCGGTTTCGACGCGCTTGGCCTCGTCATCGAACGTTTCGGGCCGGGCGCAATCGC GGTGCGGGAAACGCCGGCCATGCTCGGCGAAGTCAACGTGCAGGGGCTGGTGCGCCAGCTAGCCGATGAGATCGCCGAAT GGGACGCCGCTTCCACGCTTGCCAACAAGCTGGAATATGTGGCTGCGACCATGGCCTGCCACGGCTCGGTGCGCTCCGGC CGGCGCATGCGGCCGGAGGAGATGAACGCGCTTCTGCGGCAGATGGAAAACACGCCGGGTTCGGGCCAATGCAATCACGG CCGACCGACCTATATCGAACTGAAACTTTCCGATATAGAACGGCTCTTCGGCCGCAGCTGA
Upstream 100 bases:
>100_bases GAAATGATCAAATGCCCGGAAACCTGCAAAACATGTGCAAATGTCCGCCACCCCGGTTTTTTGCTTTCGAAGCTGCAGCG AATCCGCGAAAATGACGATC
Downstream 100 bases:
>100_bases CGCCTACATTGAATGGCAAGGCAGGCGGGGGTGGCCTTGCGCCGCGCCGAGCTATATAAATTTGGGACATTGGAGCATCC GGATTGTTCAGGAAAACGCT
Product: DNA mismatch repair protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 606; Mature: 605
Protein sequence:
>606_residues MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNGSGMSPADLELAVRRHCTSKI STTLDDIRTLGFRGEALPSIGSVAKLTITSRQQGAEQGSVISVTGGKVSDVRPAASNAGTIVEVRDLFFATPARLKFLKT ERAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLTGFAGVPTF NRGNSSHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSITLDPAFVDVNVHPAKSDVRFRDPGLIRGLIVGAI RQALTRDGDRAATTGASQMMNAFRPGYSPSGLRPSPSATWSAATSPSRPLAVSGDMQFAEAAQSRFSDITMPTARAEPRE AYEASQSPSPEPVLYPLGAARAQLHENYIIAQTENGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDLPEED CDRLMDHAAGFDALGLVIERFGPGAIAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGSVRSG RRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS
Sequences:
>Translated_606_residues MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNGSGMSPADLELAVRRHCTSKI STTLDDIRTLGFRGEALPSIGSVAKLTITSRQQGAEQGSVISVTGGKVSDVRPAASNAGTIVEVRDLFFATPARLKFLKT ERAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLTGFAGVPTF NRGNSSHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSITLDPAFVDVNVHPAKSDVRFRDPGLIRGLIVGAI RQALTRDGDRAATTGASQMMNAFRPGYSPSGLRPSPSATWSAATSPSRPLAVSGDMQFAEAAQSRFSDITMPTARAEPRE AYEASQSPSPEPVLYPLGAARAQLHENYIIAQTENGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDLPEED CDRLMDHAAGFDALGLVIERFGPGAIAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGSVRSG RRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS >Mature_605_residues AIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNGSGMSPADLELAVRRHCTSKIS TTLDDIRTLGFRGEALPSIGSVAKLTITSRQQGAEQGSVISVTGGKVSDVRPAASNAGTIVEVRDLFFATPARLKFLKTE RAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLTGFAGVPTFN RGNSSHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSITLDPAFVDVNVHPAKSDVRFRDPGLIRGLIVGAIR QALTRDGDRAATTGASQMMNAFRPGYSPSGLRPSPSATWSAATSPSRPLAVSGDMQFAEAAQSRFSDITMPTARAEPREA YEASQSPSPEPVLYPLGAARAQLHENYIIAQTENGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDLPEEDC DRLMDHAAGFDALGLVIERFGPGAIAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGSVRSGR RMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS
Specific function: This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-bindi
COG id: COG0323
COG function: function code L; DNA mismatch repair enzyme (predicted ATPase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA mismatch repair mutL/hexB family
Homologues:
Organism=Homo sapiens, GI4557757, Length=316, Percent_Identity=38.2911392405063, Blast_Score=182, Evalue=5e-46, Organism=Homo sapiens, GI4505913, Length=343, Percent_Identity=30.3206997084548, Blast_Score=130, Evalue=3e-30, Organism=Homo sapiens, GI310128478, Length=343, Percent_Identity=30.3206997084548, Blast_Score=130, Evalue=4e-30, Organism=Homo sapiens, GI4505911, Length=324, Percent_Identity=28.7037037037037, Blast_Score=130, Evalue=5e-30, Organism=Homo sapiens, GI189458898, Length=324, Percent_Identity=28.7037037037037, Blast_Score=129, Evalue=7e-30, Organism=Homo sapiens, GI189458896, Length=322, Percent_Identity=28.2608695652174, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI263191589, Length=222, Percent_Identity=34.6846846846847, Blast_Score=94, Evalue=3e-19, Organism=Homo sapiens, GI91992160, Length=361, Percent_Identity=26.5927977839335, Blast_Score=90, Evalue=6e-18, Organism=Homo sapiens, GI91992162, Length=361, Percent_Identity=26.5927977839335, Blast_Score=90, Evalue=7e-18, Organism=Escherichia coli, GI1790612, Length=340, Percent_Identity=43.8235294117647, Blast_Score=239, Evalue=3e-64, Organism=Caenorhabditis elegans, GI71991825, Length=319, Percent_Identity=33.5423197492163, Blast_Score=163, Evalue=3e-40, Organism=Caenorhabditis elegans, GI17562796, Length=397, Percent_Identity=25.9445843828715, Blast_Score=134, Evalue=2e-31, Organism=Saccharomyces cerevisiae, GI6323819, Length=317, Percent_Identity=38.4858044164038, Blast_Score=185, Evalue=2e-47, Organism=Saccharomyces cerevisiae, GI6324247, Length=339, Percent_Identity=28.023598820059, Blast_Score=125, Evalue=2e-29, Organism=Drosophila melanogaster, GI17136968, Length=326, Percent_Identity=34.6625766871166, Blast_Score=186, Evalue=3e-47, Organism=Drosophila melanogaster, GI17136970, Length=352, Percent_Identity=26.7045454545455, Blast_Score=110, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MUTL_AGRT5 (Q8UHI3)
Other databases:
- EMBL: AE007869 - PIR: AE2662 - PIR: D97444 - RefSeq: NP_353724.2 - ProteinModelPortal: Q8UHI3 - SMR: Q8UHI3 - STRING: Q8UHI3 - GeneID: 1132737 - GenomeReviews: AE007869_GR - KEGG: atu:Atu0699 - eggNOG: COG0323 - HOGENOM: HBG520262 - OMA: FLFINNR - PhylomeDB: Q8UHI3 - ProtClustDB: PRK00095 - BioCyc: ATUM176299-1:ATU0699-MONOMER - HAMAP: MF_00149 - InterPro: IPR003594 - InterPro: IPR002099 - InterPro: IPR013507 - InterPro: IPR014762 - InterPro: IPR020667 - InterPro: IPR014763 - InterPro: IPR014790 - InterPro: IPR020568 - InterPro: IPR014721 - Gene3D: G3DSA:3.30.565.10 - Gene3D: G3DSA:3.30.230.10 - PANTHER: PTHR10073 - SMART: SM00387 - SMART: SM00853 - TIGRFAMs: TIGR00585
Pfam domain/function: PF01119 DNA_mis_repair; PF02518 HATPase_c; PF08676 MutL_C; SSF55874 ATP_bd_ATPase; SSF54211 Ribosomal_S5_D2-typ_fold
EC number: NA
Molecular weight: Translated: 65194; Mature: 65062
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: PS00058 DNA_MISMATCH_REPAIR_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNG CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCC SGMSPADLELAVRRHCTSKISTTLDDIRTLGFRGEALPSIGSVAKLTITSRQQGAEQGSV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECHHCCCCCCCE ISVTGGKVSDVRPAASNAGTIVEVRDLFFATPARLKFLKTERAEAAAITEVVKRMAIAFP EEECCCCCCCCCCCCCCCCCEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC HIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLTGFAGVPTF CEEEEEECCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEECCCCCC NRGNSSHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSITLDPAFVDVNVHPA CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEECCC KSDVRFRDPGLIRGLIVGAIRQALTRDGDRAATTGASQMMNAFRPGYSPSGLRPSPSATW CCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCC SAATSPSRPLAVSGDMQFAEAAQSRFSDITMPTARAEPREAYEASQSPSPEPVLYPLGAA CCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCEEEECCHH RAQLHENYIIAQTENGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDLPEED HHHHHCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEECHHHHCCCHHH CDRLMDHAAGFDALGLVIERFGPGAIAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTL HHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH ANKLEYVAATMACHGSVRSGRRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIE HHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHH RLFGRS HHHCCC >Mature Secondary Structure AIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNG CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCC SGMSPADLELAVRRHCTSKISTTLDDIRTLGFRGEALPSIGSVAKLTITSRQQGAEQGSV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECHHCCCCCCCE ISVTGGKVSDVRPAASNAGTIVEVRDLFFATPARLKFLKTERAEAAAITEVVKRMAIAFP EEECCCCCCCCCCCCCCCCCEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC HIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLTGFAGVPTF CEEEEEECCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEECCCCCC NRGNSSHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSITLDPAFVDVNVHPA CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEECCC KSDVRFRDPGLIRGLIVGAIRQALTRDGDRAATTGASQMMNAFRPGYSPSGLRPSPSATW CCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCC SAATSPSRPLAVSGDMQFAEAAQSRFSDITMPTARAEPREAYEASQSPSPEPVLYPLGAA CCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCEEEECCHH RAQLHENYIIAQTENGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDLPEED HHHHHCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEECHHHHCCCHHH CDRLMDHAAGFDALGLVIERFGPGAIAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTL HHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH ANKLEYVAATMACHGSVRSGRRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIE HHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHH RLFGRS HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11743193; 11743194