Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is glyQ [H]
Identifier: 159184400
GI number: 159184400
Start: 626233
End: 627165
Strand: Direct
Name: glyQ [H]
Synonym: Atu0639
Alternate gene names: 159184400
Gene position: 626233-627165 (Clockwise)
Preceding gene: 15887979
Following gene: 159184401
Centisome position: 22.04
GC content: 58.84
Gene sequence:
>933_bases ATGAACCCGAAGCGTTCCTTTCAGGCACTGATCCTGACGCTGCACAATTACTGGGCCGACAAGGGCTGCGCGGTGCTGCA GCCCTACGATATGGAAGTGGGTGCGGGCACGTTTCATCCGGCCACGACGCTGCGCGCGCTGGGCCCCAAGCCGTGGAAGG CCGCCTATGTGCAGCCGTCGCGTCGTCCTTCTGACGGTCGTTACGGGGAAAACCCCAACCGGTTGCAGCACTATTACCAG TATCAGGTCATTCTGAAGCCCAACCCGTCCAACCTGCAGGAACTCTATCTCGGCTCGCTGAAGGCGATCGGCCTCGATCC ACTGCTGCATGATGTGCGCTTCGTTGAGGACGACTGGGAAAGCCCGACACTCGGCGCCTGGGGTCTTGGCTGGGAATGCT GGTGCGACGGCATGGAAGTGTCGCAATTCACCTATTTCCAGCAGGTCTGCGGCATCGAATGCTCGCCGGTCGCGGGCGAG CTGACCTATGGTCTGGAGCGTCTGGCCATGTATGTTCAGGGCGTCGACAATGTCTACGACTTGAACTTCAACGGTCGCGA GGGCGAAGAGAAGATTTCCTATGGCGACGTCTTCCTACAGGCCGAGCAGGAATATTCCCGTCACAACTTCGAATTTGCCG ATACATCAATGCTGCATCGCCATTTCATCGATGCGGAAAAGGAATGCCTGGCGCTTCTCGCTGCCGGCGCGCCTGGTGAC AATGATAATCAGCGCCTGCACAAATGCGTGTTTCCGGCCTATGACCAGTGCATCAAGGCCAGCCACATTTTTAATCTTCT CAATGCTCGGGGCGTGATCTCGGTCACGGAGCGTGAGAGGTATATCGCGCGGGTACGTGACTTGGCGAAAGCCTGCGGCG AAGCCTTCCTGCTGACGGATGCCGGCGGGCTGAACTGGAACAGGGCCGCCTGA
Upstream 100 bases:
>100_bases CCCACGCCATGCCGTGGCACCAGTCCGCATCCGAAGTAAGTCACTGCTTACTTGTCCTCCTAACGCCGCGATGACTGAAA TGACCGATATTCCCGACCAT
Downstream 100 bases:
>100_bases TTTTCGAGGGCAGTTTCACGCCAAAGTTTCAATAAATTTGAAAGGCCGTTCTTGACGGCCTTTTATTTTGTGTTGATTGT TCCAGGGAAAAATCAGCATG
Product: glycyl-tRNA synthetase subunit alpha
Products: NA
Alternate protein names: Glycine--tRNA ligase alpha subunit; GlyRS [H]
Number of amino acids: Translated: 310; Mature: 310
Protein sequence:
>310_residues MNPKRSFQALILTLHNYWADKGCAVLQPYDMEVGAGTFHPATTLRALGPKPWKAAYVQPSRRPSDGRYGENPNRLQHYYQ YQVILKPNPSNLQELYLGSLKAIGLDPLLHDVRFVEDDWESPTLGAWGLGWECWCDGMEVSQFTYFQQVCGIECSPVAGE LTYGLERLAMYVQGVDNVYDLNFNGREGEEKISYGDVFLQAEQEYSRHNFEFADTSMLHRHFIDAEKECLALLAAGAPGD NDNQRLHKCVFPAYDQCIKASHIFNLLNARGVISVTERERYIARVRDLAKACGEAFLLTDAGGLNWNRAA
Sequences:
>Translated_310_residues MNPKRSFQALILTLHNYWADKGCAVLQPYDMEVGAGTFHPATTLRALGPKPWKAAYVQPSRRPSDGRYGENPNRLQHYYQ YQVILKPNPSNLQELYLGSLKAIGLDPLLHDVRFVEDDWESPTLGAWGLGWECWCDGMEVSQFTYFQQVCGIECSPVAGE LTYGLERLAMYVQGVDNVYDLNFNGREGEEKISYGDVFLQAEQEYSRHNFEFADTSMLHRHFIDAEKECLALLAAGAPGD NDNQRLHKCVFPAYDQCIKASHIFNLLNARGVISVTERERYIARVRDLAKACGEAFLLTDAGGLNWNRAA >Mature_310_residues MNPKRSFQALILTLHNYWADKGCAVLQPYDMEVGAGTFHPATTLRALGPKPWKAAYVQPSRRPSDGRYGENPNRLQHYYQ YQVILKPNPSNLQELYLGSLKAIGLDPLLHDVRFVEDDWESPTLGAWGLGWECWCDGMEVSQFTYFQQVCGIECSPVAGE LTYGLERLAMYVQGVDNVYDLNFNGREGEEKISYGDVFLQAEQEYSRHNFEFADTSMLHRHFIDAEKECLALLAAGAPGD NDNQRLHKCVFPAYDQCIKASHIFNLLNARGVISVTERERYIARVRDLAKACGEAFLLTDAGGLNWNRAA
Specific function: Unknown
COG id: COG0752
COG function: function code J; Glycyl-tRNA synthetase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1789983, Length=293, Percent_Identity=64.1638225255973, Blast_Score=390, Evalue=1e-110,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006194 - InterPro: IPR002310 [H]
Pfam domain/function: PF02091 tRNA-synt_2e [H]
EC number: =6.1.1.14 [H]
Molecular weight: Translated: 35055; Mature: 35055
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPKRSFQALILTLHNYWADKGCAVLQPYDMEVGAGTFHPATTLRALGPKPWKAAYVQPS CCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCC RRPSDGRYGENPNRLQHYYQYQVILKPNPSNLQELYLGSLKAIGLDPLLHDVRFVEDDWE CCCCCCCCCCCHHHHHEEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCC SPTLGAWGLGWECWCDGMEVSQFTYFQQVCGIECSPVAGELTYGLERLAMYVQGVDNVYD CCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE LNFNGREGEEKISYGDVFLQAEQEYSRHNFEFADTSMLHRHFIDAEKECLALLAAGAPGD CCCCCCCCCCCCCHHHEEEEEHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCC NDNQRLHKCVFPAYDQCIKASHIFNLLNARGVISVTERERYIARVRDLAKACGEAFLLTD CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCEEEEEC AGGLNWNRAA CCCCCCCCCC >Mature Secondary Structure MNPKRSFQALILTLHNYWADKGCAVLQPYDMEVGAGTFHPATTLRALGPKPWKAAYVQPS CCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCC RRPSDGRYGENPNRLQHYYQYQVILKPNPSNLQELYLGSLKAIGLDPLLHDVRFVEDDWE CCCCCCCCCCCHHHHHEEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCC SPTLGAWGLGWECWCDGMEVSQFTYFQQVCGIECSPVAGELTYGLERLAMYVQGVDNVYD CCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE LNFNGREGEEKISYGDVFLQAEQEYSRHNFEFADTSMLHRHFIDAEKECLALLAAGAPGD CCCCCCCCCCCCCHHHEEEEEHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCC NDNQRLHKCVFPAYDQCIKASHIFNLLNARGVISVTERERYIARVRDLAKACGEAFLLTD CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCEEEEEC AGGLNWNRAA CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA