Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184350
Identifier: 159184350
GI number: 159184350
Start: 503248
End: 503625
Strand: Reverse
Name: 159184350
Synonym: Atu0513
Alternate gene names: NA
Gene position: 503625-503248 (Counterclockwise)
Preceding gene: 15887876
Following gene: 15887860
Centisome position: 17.72
GC content: 58.99
Gene sequence:
>378_bases ATGGAGAAAGGCCGCAGTTCAAGGCGCCATCCGCAAGTGCTCATCGGTCTCGTGGTCGCGAGTCTGCTTGTCATGATCGG CTTTCAGGTACCCTCGGGCGTCAAGGCACTCTCCAAGGCTAGCCGCCTCGAGCGGTTACAGACCGTCGATCTCAGCCGTT CGCTTTCCCTTCGCGATAAGGATTGCGATAGCGGCAACGATTACACCTGCCGGAGCAGCGATACCGGCCGAGGGTTCCAG CACGGGGAGTTCCCCTCACCCGCGCTCAGCATTACCGAAAATACCAAGGCCTCCCTTGTTGCTGTTGCCATCGTGCCACA AGCTTTCCGAGACTTTGCCAGCGTGGTTCCCCGCGCGCCTCCGCATATTATGTATTAG
Upstream 100 bases:
>100_bases AGCGCGTGCGGGTTCCCCTAAAACAAATCAACGGGATATTCGCTCAGCGGTGATGCTTTAGAGAGACCTTTTCGACCAAG GAGATGCCAACTTGCCACGG
Downstream 100 bases:
>100_bases TCATCCGGCGGTCATCATCATTGGGTTCATTGTGAACCTTGAGGGATCGGAGTCGTCGGAAACCCGCCGTAGGCTCCCAT TCCAGAAAGAAAACCGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 125; Mature: 125
Protein sequence:
>125_residues MEKGRSSRRHPQVLIGLVVASLLVMIGFQVPSGVKALSKASRLERLQTVDLSRSLSLRDKDCDSGNDYTCRSSDTGRGFQ HGEFPSPALSITENTKASLVAVAIVPQAFRDFASVVPRAPPHIMY
Sequences:
>Translated_125_residues MEKGRSSRRHPQVLIGLVVASLLVMIGFQVPSGVKALSKASRLERLQTVDLSRSLSLRDKDCDSGNDYTCRSSDTGRGFQ HGEFPSPALSITENTKASLVAVAIVPQAFRDFASVVPRAPPHIMY >Mature_125_residues MEKGRSSRRHPQVLIGLVVASLLVMIGFQVPSGVKALSKASRLERLQTVDLSRSLSLRDKDCDSGNDYTCRSSDTGRGFQ HGEFPSPALSITENTKASLVAVAIVPQAFRDFASVVPRAPPHIMY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13598; Mature: 13598
Theoretical pI: Translated: 10.17; Mature: 10.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKGRSSRRHPQVLIGLVVASLLVMIGFQVPSGVKALSKASRLERLQTVDLSRSLSLRDK CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC DCDSGNDYTCRSSDTGRGFQHGEFPSPALSITENTKASLVAVAIVPQAFRDFASVVPRAP CCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC PHIMY CCCCC >Mature Secondary Structure MEKGRSSRRHPQVLIGLVVASLLVMIGFQVPSGVKALSKASRLERLQTVDLSRSLSLRDK CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC DCDSGNDYTCRSSDTGRGFQHGEFPSPALSITENTKASLVAVAIVPQAFRDFASVVPRAP CCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC PHIMY CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA