Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is fbpA [H]
Identifier: 159184297
GI number: 159184297
Start: 403461
End: 404477
Strand: Direct
Name: fbpA [H]
Synonym: Atu0407
Alternate gene names: 159184297
Gene position: 403461-404477 (Clockwise)
Preceding gene: 159184296
Following gene: 15887757
Centisome position: 14.2
GC content: 58.7
Gene sequence:
>1017_bases ATGACGAAATTTACTCGATTTGCCCTGCTTGCCAGCACGGTTGCCTTTGCCGCCGGAACGGTGAGCGCCGCTGAGCTCAA CATCTACACGACCCGCGAGCCGGGCCTGATCCAGCCCCTGCTGGAATCCTTCACCGCTTCGAGTGGCGTCAAGGTCAACA CCGTTTTCCTCAAGGATGGTCTTGCTGAGCGTGTTCTGAGCGAGGGTGCCAGCTCTCCTGCCGACGTTCTGATGACTGTC GATGCCGGTAATCTCGTTGATCTCGCCGAAAAGGGTGTCACCCAGGCGGTCGAATCCGAGACGCTGACCAAGGCTGTTCC CGCTGAGCTTCGCGATGCCAAGGGTCACTGGTTCGCGCTCTCCATGCGCGCCCGCGTCCTTTATGCGGCGAAGGACCTCG ATCTCGCTTCCTTCAATTATGAAGATCTGGCGGATGCGAAGTGGAAGGGCAAGGTCTGCATTCGCGCCGGCCAGCATCCC TATAACACGGCGCTGTTTGCCGACTACATCGCCCATTACGGCGCGGCGGACACCGAAAAGTGGCTTGCTGGCGTCAAGGA AAACCTTGCTCGCAAGGCCGGCGGCGGCGACCGTGACGTTGCCAAGGATATTCTCGGCGGCATTTGCGATATCGGTATTG CCAACTCCTATTATGTCGGCCTGATGCGCTCGGGCAAGGGCGGCGAAGAGCAGGTGAAGTGGGGCGATGCTATCAAGGTG GTTCTGCCGACCTTCAAGAATGGCGGCACGCAGGTCAATATCAGCGGCGCGGCCGTGGCCAAGAACGCGCCGAACAAGGC GGAAGCCGTCAAACTTCTGGAATATCTCGTCTCTGACGAAGCCCAGAAGATCTATGCCGAAGCCAACTATGAATATCCGG TCAAGCAGGGTGCGGCTCTCAACGAGATCGTCGCTTCCTTCGGCACACTGAAGATCGACAACAAGCCGCTCACGGAAATC GTCTCGCACCGCAAGCAGGCGAGCGAACTGGTCGACAAGGTCGGTTTCGACAAGTAA
Upstream 100 bases:
>100_bases TGATCCAAGACGCGTAAAAAACCGAGAAATAAAACTTGATTTGCGCCGTCATGTATGATGTTTGCTCCCCTTATTGCCGC TATCGGAGAGGGAACACTAT
Downstream 100 bases:
>100_bases GTCCAGTCGACGATAACAAGGTGGAAGGCGTTCGCACCTGCGGACGCCTTTCCGCGTATTTTCCAGAAGCACATGAATCC AGACACCATCCAGCCATTGC
Product: ABC transporter, substrate binding protein (iron)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MTKFTRFALLASTVAFAAGTVSAAELNIYTTREPGLIQPLLESFTASSGVKVNTVFLKDGLAERVLSEGASSPADVLMTV DAGNLVDLAEKGVTQAVESETLTKAVPAELRDAKGHWFALSMRARVLYAAKDLDLASFNYEDLADAKWKGKVCIRAGQHP YNTALFADYIAHYGAADTEKWLAGVKENLARKAGGGDRDVAKDILGGICDIGIANSYYVGLMRSGKGGEEQVKWGDAIKV VLPTFKNGGTQVNISGAAVAKNAPNKAEAVKLLEYLVSDEAQKIYAEANYEYPVKQGAALNEIVASFGTLKIDNKPLTEI VSHRKQASELVDKVGFDK
Sequences:
>Translated_338_residues MTKFTRFALLASTVAFAAGTVSAAELNIYTTREPGLIQPLLESFTASSGVKVNTVFLKDGLAERVLSEGASSPADVLMTV DAGNLVDLAEKGVTQAVESETLTKAVPAELRDAKGHWFALSMRARVLYAAKDLDLASFNYEDLADAKWKGKVCIRAGQHP YNTALFADYIAHYGAADTEKWLAGVKENLARKAGGGDRDVAKDILGGICDIGIANSYYVGLMRSGKGGEEQVKWGDAIKV VLPTFKNGGTQVNISGAAVAKNAPNKAEAVKLLEYLVSDEAQKIYAEANYEYPVKQGAALNEIVASFGTLKIDNKPLTEI VSHRKQASELVDKVGFDK >Mature_337_residues TKFTRFALLASTVAFAAGTVSAAELNIYTTREPGLIQPLLESFTASSGVKVNTVFLKDGLAERVLSEGASSPADVLMTVD AGNLVDLAEKGVTQAVESETLTKAVPAELRDAKGHWFALSMRARVLYAAKDLDLASFNYEDLADAKWKGKVCIRAGQHPY NTALFADYIAHYGAADTEKWLAGVKENLARKAGGGDRDVAKDILGGICDIGIANSYYVGLMRSGKGGEEQVKWGDAIKVV LPTFKNGGTQVNISGAAVAKNAPNKAEAVKLLEYLVSDEAQKIYAEANYEYPVKQGAALNEIVASFGTLKIDNKPLTEIV SHRKQASELVDKVGFDK
Specific function: May also be part of a periplasmic ABC transporter complex involved in iron import [H]
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Lumenal side [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 - InterPro: IPR006311 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 36170; Mature: 36039
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKFTRFALLASTVAFAAGTVSAAELNIYTTREPGLIQPLLESFTASSGVKVNTVFLKDG CCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCC LAERVLSEGASSPADVLMTVDAGNLVDLAEKGVTQAVESETLTKAVPAELRDAKGHWFAL HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEE SMRARVLYAAKDLDLASFNYEDLADAKWKGKVCIRAGQHPYNTALFADYIAHYGAADTEK EEHHEEEEEECCCCCCCCCHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCHHH WLAGVKENLARKAGGGDRDVAKDILGGICDIGIANSYYVGLMRSGKGGEEQVKWGDAIKV HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHCCCCEEEE VLPTFKNGGTQVNISGAAVAKNAPNKAEAVKLLEYLVSDEAQKIYAEANYEYPVKQGAAL EEECCCCCCCEEEECCCEEECCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHH NEIVASFGTLKIDNKPLTEIVSHRKQASELVDKVGFDK HHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TKFTRFALLASTVAFAAGTVSAAELNIYTTREPGLIQPLLESFTASSGVKVNTVFLKDG CCHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCC LAERVLSEGASSPADVLMTVDAGNLVDLAEKGVTQAVESETLTKAVPAELRDAKGHWFAL HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEE SMRARVLYAAKDLDLASFNYEDLADAKWKGKVCIRAGQHPYNTALFADYIAHYGAADTEK EEHHEEEEEECCCCCCCCCHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCHHH WLAGVKENLARKAGGGDRDVAKDILGGICDIGIANSYYVGLMRSGKGGEEQVKWGDAIKV HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHCCCCEEEE VLPTFKNGGTQVNISGAAVAKNAPNKAEAVKLLEYLVSDEAQKIYAEANYEYPVKQGAAL EEECCCCCCCEEEECCCEEECCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHH NEIVASFGTLKIDNKPLTEIVSHRKQASELVDKVGFDK HHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8828233; 10411274 [H]