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The map label for this gene is ybfI [H]

Identifier: 159184226

GI number: 159184226

Start: 238693

End: 239589

Strand: Reverse

Name: ybfI [H]

Synonym: Atu0239

Alternate gene names: 159184226

Gene position: 239589-238693 (Counterclockwise)

Preceding gene: 15887591

Following gene: 15887587

Centisome position: 8.43

GC content: 58.75

Gene sequence:

>897_bases
ATGACGGCGATCTTGGTATCAAACATGCGAACTCAATCTGGCTGTGGTTACGAAAGAGAAGCGATCCTAGCGCCTCGGGG
CAGCAACGATCTTGAACGTTCGTGCAAATTCGAAGGGATCGTGCAGGCTCGCTCCAGCGAAGGCATCGAGCGCATAGACG
CGCGCTTTCACGGCAACGCCTATGCGCCGCATCGCCATGATACCTATGCGCTCGGCGTGACGCTTTCCGGCGTACAGACC
TTTTCCTATCGCGGCACATCGCATTTCAGCATGCCGGGAAACGTCATCGTTCTGCATCCCGATGAAATTCACGATGGTGG
CGCGGGCACGGACGAAGGCCTGCACTATCGCATGCTCTACCTTCCACCGGAGAAAACGACGGAGGCGGGATATAACACGC
TGCCCTTTGCCCGAAGTGCCGTCATCGAGGACGAAGAGTTCCGCCAATGCCTGACCGAGGCACTCGGCAATCTCGACGGC
GAACCTGACAGTCTGCTTCTCACCGACTGGCAATCGCGGCTTTCGGATCTGCTCTGGAAACATTCGAACGGAAGCGCCAG
ATCCATCAAGTGGATCGACCGCGCCGCCGTTCTACTGTGCCGCGACTATCTGCTGGAGAACAGCGCCGACACCGTTGTGT
CGCAGGAGCTGGAACAGATAAGCGGGCTCGACCGCTTCACACTCTTCCGTCACTTTCGTTGCGTGTTCGGCACCAGCCCG
CACCGCTATCTCATCATGCGCCGGCTGCAAAAATGCAAGGACATGATGCGCGCGGGTGCGAGCCTTGCCGAAACGGCGTT
TGCCTGCGGTTTCGCGGACCAGGCGCATTTCACCCGGCATTTCAAAAATGCCTTCGGCATGCCCCCGGGCCGTTGGCTGA
GCCTCGTCTCACATTAG

Upstream 100 bases:

>100_bases
GTATGGTTCCCCGATAATCTCTCCGGTCTGGGCGACAATGCCGGACATGAGAAATGCGGTGACGTTCAGTTTTTGCCATA
CGGCAAGGTCATCACGAAGA

Downstream 100 bases:

>100_bases
CGCATTTCCGGGAACAGGATGGACCGGTGAGCCGCAGCGCCCGCCATGGCGCCATCGCCCACCGCAAGGGCGACCGAGCC
GGCCGGTCTTGCCACATCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MTAILVSNMRTQSGCGYEREAILAPRGSNDLERSCKFEGIVQARSSEGIERIDARFHGNAYAPHRHDTYALGVTLSGVQT
FSYRGTSHFSMPGNVIVLHPDEIHDGGAGTDEGLHYRMLYLPPEKTTEAGYNTLPFARSAVIEDEEFRQCLTEALGNLDG
EPDSLLLTDWQSRLSDLLWKHSNGSARSIKWIDRAAVLLCRDYLLENSADTVVSQELEQISGLDRFTLFRHFRCVFGTSP
HRYLIMRRLQKCKDMMRAGASLAETAFACGFADQAHFTRHFKNAFGMPPGRWLSLVSH

Sequences:

>Translated_298_residues
MTAILVSNMRTQSGCGYEREAILAPRGSNDLERSCKFEGIVQARSSEGIERIDARFHGNAYAPHRHDTYALGVTLSGVQT
FSYRGTSHFSMPGNVIVLHPDEIHDGGAGTDEGLHYRMLYLPPEKTTEAGYNTLPFARSAVIEDEEFRQCLTEALGNLDG
EPDSLLLTDWQSRLSDLLWKHSNGSARSIKWIDRAAVLLCRDYLLENSADTVVSQELEQISGLDRFTLFRHFRCVFGTSP
HRYLIMRRLQKCKDMMRAGASLAETAFACGFADQAHFTRHFKNAFGMPPGRWLSLVSH
>Mature_297_residues
TAILVSNMRTQSGCGYEREAILAPRGSNDLERSCKFEGIVQARSSEGIERIDARFHGNAYAPHRHDTYALGVTLSGVQTF
SYRGTSHFSMPGNVIVLHPDEIHDGGAGTDEGLHYRMLYLPPEKTTEAGYNTLPFARSAVIEDEEFRQCLTEALGNLDGE
PDSLLLTDWQSRLSDLLWKHSNGSARSIKWIDRAAVLLCRDYLLENSADTVVSQELEQISGLDRFTLFRHFRCVFGTSPH
RYLIMRRLQKCKDMMRAGASLAETAFACGFADQAHFTRHFKNAFGMPPGRWLSLVSH

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33464; Mature: 33333

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAILVSNMRTQSGCGYEREAILAPRGSNDLERSCKFEGIVQARSSEGIERIDARFHGNA
CCEEEEECCCCCCCCCCCCCEEECCCCCCHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCC
YAPHRHDTYALGVTLSGVQTFSYRGTSHFSMPGNVIVLHPDEIHDGGAGTDEGLHYRMLY
CCCCCCCCEEEEEEEECEEEEEECCCEEECCCCCEEEECCCCCCCCCCCCCCCCEEEEEE
LPPEKTTEAGYNTLPFARSAVIEDEEFRQCLTEALGNLDGEPDSLLLTDWQSRLSDLLWK
ECCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHEE
HSNGSARSIKWIDRAAVLLCRDYLLENSADTVVSQELEQISGLDRFTLFRHFRCVFGTSP
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
HRYLIMRRLQKCKDMMRAGASLAETAFACGFADQAHFTRHFKNAFGMPPGRWLSLVSH
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHCC
>Mature Secondary Structure 
TAILVSNMRTQSGCGYEREAILAPRGSNDLERSCKFEGIVQARSSEGIERIDARFHGNA
CEEEEECCCCCCCCCCCCCEEECCCCCCHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCC
YAPHRHDTYALGVTLSGVQTFSYRGTSHFSMPGNVIVLHPDEIHDGGAGTDEGLHYRMLY
CCCCCCCCEEEEEEEECEEEEEECCCEEECCCCCEEEECCCCCCCCCCCCCCCCEEEEEE
LPPEKTTEAGYNTLPFARSAVIEDEEFRQCLTEALGNLDGEPDSLLLTDWQSRLSDLLWK
ECCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHEE
HSNGSARSIKWIDRAAVLLCRDYLLENSADTVVSQELEQISGLDRFTLFRHFRCVFGTSP
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
HRYLIMRRLQKCKDMMRAGASLAETAFACGFADQAHFTRHFKNAFGMPPGRWLSLVSH
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]