Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184167
Identifier: 159184167
GI number: 159184167
Start: 121502
End: 121912
Strand: Direct
Name: 159184167
Synonym: Atu0116
Alternate gene names: NA
Gene position: 121502-121912 (Clockwise)
Preceding gene: 159184166
Following gene: 15887471
Centisome position: 4.28
GC content: 61.56
Gene sequence:
>411_bases ATGACCGATCTGCTCGGCGGCCAGGTGGATATCATGTGTGACCAGACCACCAACACCACCAAGCAGATCCAGGGCGGGAC CGTGAAAGCCTATGCCGTAACGACGGCCAAGCGGCTGGACGTGCTGCCGGATGTGCCGACGGTTGTCGAAGCGGGCCTCC CGAAGCTTGAGGTGGGTATCTGGCACGGTATCTACACGCCGAAGGGTACGCCTGCCGAAATCAACGAGAAGCTCTCCAAG TCGCTGCAAGTCGCGCTGAAGGATAAGAATGTCGCGGCCCGTTTTGCCGAACTCGGCACCACGCCCTCGTCGGAAAGCGA TGCGACGCCGGCGGCGCTGAAGGCCAAGCTTGAGAGCGAAATCGCTCGCTGGAAGCCGGTCATCGAGTCCGCCGGCCAAT ATGCCGATTGA
Upstream 100 bases:
>100_bases TGCCGGCATCGGCGCGGCGTCCCACCTGTGCGGCATGCTGTTCATGAGCGCCATCGAGACGCCACTGGTCACAGTCCCTT ACAAGGGCACCGGCCCTGCC
Downstream 100 bases:
>100_bases TGAACGCGGAACGACCGGCGGTATCTCGCCGCCGGTCGACTGCGGTCGTTTCAACAGGCGGACCGGTGTGGCGCCGGCCG TGATGGAGGGGCATCTTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: ORFY [H]
Number of amino acids: Translated: 136; Mature: 135
Protein sequence:
>136_residues MTDLLGGQVDIMCDQTTNTTKQIQGGTVKAYAVTTAKRLDVLPDVPTVVEAGLPKLEVGIWHGIYTPKGTPAEINEKLSK SLQVALKDKNVAARFAELGTTPSSESDATPAALKAKLESEIARWKPVIESAGQYAD
Sequences:
>Translated_136_residues MTDLLGGQVDIMCDQTTNTTKQIQGGTVKAYAVTTAKRLDVLPDVPTVVEAGLPKLEVGIWHGIYTPKGTPAEINEKLSK SLQVALKDKNVAARFAELGTTPSSESDATPAALKAKLESEIARWKPVIESAGQYAD >Mature_135_residues TDLLGGQVDIMCDQTTNTTKQIQGGTVKAYAVTTAKRLDVLPDVPTVVEAGLPKLEVGIWHGIYTPKGTPAEINEKLSKS LQVALKDKNVAARFAELGTTPSSESDATPAALKAKLESEIARWKPVIESAGQYAD
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 14481; Mature: 14349
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLLGGQVDIMCDQTTNTTKQIQGGTVKAYAVTTAKRLDVLPDVPTVVEAGLPKLEVGI CCCCCCCEEEEEECCCCCCHHHCCCCEEEEEEEHHHHHHCCCCCCHHHHHCCCCEEEEEE WHGIYTPKGTPAEINEKLSKSLQVALKDKNVAARFAELGTTPSSESDATPAALKAKLESE EECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH IARWKPVIESAGQYAD HHHHHHHHHCCCCCCC >Mature Secondary Structure TDLLGGQVDIMCDQTTNTTKQIQGGTVKAYAVTTAKRLDVLPDVPTVVEAGLPKLEVGI CCCCCCEEEEEECCCCCCHHHCCCCEEEEEEEHHHHHHCCCCCCHHHHHCCCCEEEEEE WHGIYTPKGTPAEINEKLSKSLQVALKDKNVAARFAELGTTPSSESDATPAALKAKLESE EECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH IARWKPVIESAGQYAD HHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8672817 [H]